EY680040

Overview
NameEY680040
Unique NameEY680040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680040_ssr37 microsatellite EY680040_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY680040 vs. ExPASy Swiss-Prot
Match: GGH_ARATH (Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:  244 VYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNVNIEGTLFQRFPRSSLR 411
            +YAICLGFELL+MI+S++R+I E  D  N AS+LQFV+NVNI+GT+FQRFP   L+
Sbjct:  151 IYAICLGFELLTMIISQNRDIFEKMDARNSASSLQFVENVNIQGTIFQRFPPELLK 206
The following BLAST results are available for this feature:
BLAST of EY680040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GGH_ARATH1.981e-1464.29Gamma-glutamyl hydrolase OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680040 ID=EY680040; Name=EY680040; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGGCCGCCTCATCTCTCTGGCGATATCCTTCTTCTTCTTCA
TACCTCTAAAAATTCTCGTCTTCGAGCCCTAAAATTCAAGGGTCCATGCC
ATAAGAAATCCTAACACCACTGCTCAAATTCTAAGACCCATACCATACGA
AACCCTAACGATCTACATTATACAAAACATCCACCATGCCGCTATGCCAC
AAGCTCACACGACCGGCTTTAGATCTCCAAATTTTGCTCATCTGTATATG
CCATTTGCTTAGGCTTTGAACTTTTATCAATGATCGTTAGCGAGGACAGA
AACATTCTGGAAACATTTGATGGAGCAAATCAGGCATCTACCCTCCAATT
CGTCAAAAACGTTAATATTGAAGGAACATTGTTCCAAAGATTTCCCCGGA
GCTCCTTAAGAAGTTGAGTACGGATTGCTTGGTTATGCAAAACCACCATG
TAAGAAAATTGTGCTTCACGTACGGTTTACTTGCTTAGCATTTGTGTACC
TAGATTCAATTTCTTAAAAATGTTCTAAAACAACCATCTTTTTATTGCTA
GATTCAATTCTCTGTTTTTAAATTTCCTTCATCTTCTGTAATAATGCTAG
TCACTCATGAATATCTAGCTCAATGAAAGTGTTGGGTCTAAAAAGCCAAC
CTTTTTTTGGAAATCCTGCTTTGTCCTGACCCCTCTTTAATTCCTGGAAG
AATTCCATTTTAATGGGACTTCTTGTACACTTTGATTCCCTGGAATCAGT
GCATTTCCAATTTTGGGAAAAAAAGGGAACCCAAAAAATGTTAAAAATTT
ATTAAATTTATATGGGAAAAAAAAGTAAAAAATTTTGGTTTGATTCAAAA
TTTTTTAGGTGTTAAACCCATACAAAAAAAAATAGGCTTTTTCCCCCCGA
AAAAAAAGAGCAGTCCAAAACCATGGGA
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