EY680038

Overview
NameEY680038
Unique NameEY680038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_PONAB (Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.226e-40
Identity = 83/187 (44.39%), Postives = 126/187 (67.38%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSK 563
            D  R +LADAGD V+DANFV   A+ GILRL   + W++E++A   SLR+GP +T+ DRVF +E+N  +  TDQ+Y+  MF+EALKTGF++ QAA+D+YR      G++R+LV+RF++VQT L+ P CPH  E++W ++ K D   + A WP  G  D +L  +++YL +    +R  L+  ++ +K
Sbjct:  737 DGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPANTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYR-ELAVEGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSI-MNASWPVAGPVDEVLIHSSQYLMEVTHDLRLRLKNYMMPAK 921          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_MOUSE (Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.601e-40
Identity = 85/187 (45.45%), Postives = 126/187 (67.38%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSK 563
            D  R +LADAGD V+DANFV   A+ GILRL   + W++E+LA  SSLR+GP  ++ DRVF +E+N  +  TDQ+Y+  MF+EALKTGF++ QAA+D+YR      G++R+LV+RF++VQT L+TP CPH  E++W ++ K D   + A WP  G  D  L  +++YL +    +R  L+  ++ +K
Sbjct:  739 DGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMLASCSSLRSGPADSFNDRVFASEMNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYR-ELATEGMHRELVFRFIEVQTILLTPFCPHLCEHIWTLLGKPDSI-MHASWPVAGPVDESLIRSSQYLMEVAHDLRLRLKNYMMPAK 923          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_HUMAN (Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 2.091e-40
Identity = 83/187 (44.39%), Postives = 126/187 (67.38%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSK 563
            D  R +LADAGD V+DANFV   A+ GILRL   + W++E++A   SLR+GP ST+ DRVF +E+N  +  TDQ+Y+  MF+EALKTGF++ QAA+D+YR      G++R+LV+RF++VQT L+ P CPH  E++W ++ K D   + A WP  G  + +L  +++YL +    +R  L+  ++ +K
Sbjct:  737 DGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYR-ELAVEGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSI-MNASWPVAGPVNEVLIHSSQYLMEVTHDLRLRLKNYMMPAK 921          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_CAEEL (Leucyl-tRNA synthetase OS=Caenorhabditis elegans GN=lrs-1 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.392e-36
Identity = 83/201 (41.29%), Postives = 122/201 (60.70%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAV-ESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGA--GGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKAHKKGAPVAT 596
            D  R SLADAGDG++DANFV+  A+  ILRL   I W++E++   ++ L       +ADRVF NE+N  +  T+Q+Y+   F++ALKTGF++ QA RD YR  C      ++  LV+RF++ Q  +++PICPH AEY+W+ +L KDG  V A WPT    D  L    +++ +S+   R  L+  +   KKA K+   V T
Sbjct:  739 DGMRLSLADAGDGLEDANFVYAMADAAILRLFTMIEWIKEMIEQRDAGLLRKDAKKFADRVFANEMNSLIAATEQNYEATNFKDALKTGFFEYQAIRDTYRELCAGIDEPMSESLVFRFIETQMLILSPICPHIAEYIWQ-LLGKDGLIVNAPWPTVDPVDEKLAIGARFITESLAEFRARLKTYMTPKKKALKEIPEVPT 938          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_DICDI (Leucyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.605e-32
Identity = 80/198 (40.40%), Postives = 116/198 (58.59%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKAHKKGAPVAT 596
            D TR +LADAGD ++DANFV  TA T +L+L  +I W++E L      R+GP     D +FE+EIN  +  +++ Y+   FR+AL   F+DLQ ARD Y+++     +++DLV RF++VQ  LI PI PH+A+ ++ ++ K  G  + AGWP  G  D      N Y+Q +I   R  LQ      +KA  KG P  T
Sbjct:  732 DGTRVALADAGDSIEDANFVDQTAVTSLLKLHTQIQWVQETLDSIDKFRSGPLDRIQDTIFESEINNIIVESEKAYQKTNFRDALHLVFFDLQNARDHYKVTT-LDQMHKDLVLRFIEVQALLIYPIAPHFAQKLFNMLGK--GNILSAGWPKAGAIDYEALKKNNYVQQTIYNFRMKLQVY----QKAKLKGKPAGT 922          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_NEUCR (Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora crassa GN=leu-6 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.502e-30
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGG--LNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQ 509
            DA R +LADAGDG+ D+NFV D A+  ILR      W+EE L  ES LRTG  +++ D +F+NE+N  V    +HY+   ++ ALK   YD   ARD YR +C A G  L++DLV +++ +Q  +ITPI PH+A+YVW+  L +      A WP     +  L +A  Y++
Sbjct:  778 DAARVALADAGDGISDSNFVEDVADNTILRFYTNKEWIEETLKDES-LRTGELNSFQDALFDNEMNALVNEARKHYEETSYKLALKAAHYDFLNARDMYREACAAAGIPLHKDLVTKYIRLQALVITPIAPHWADYVWQECLGEPKSIQFARWPEVPAANPALTAARDYVR 947          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_SCHPO (Putative leucyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC26F1.13c PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.454e-30
Identity = 78/197 (39.59%), Postives = 116/197 (58.88%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKK-DGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMR---KLLQKQILGSKKAHKKG 581
            DATR +LADAGD VDDANF    AN+ ILRL  + AW +E++    +LRTGP + + D+VFENEIN  +E + + +   +F+ ALK+ FYDLQ ARD YR       ++RDLV R+++ Q  L+    PH++E++W   LKK     V   +P   +P       N  L +S++ +R   +++++      K  KKG
Sbjct:  758 DATRLALADAGDTVDDANFEEALANSAILRLYTQEAWCKEMMENLDNLRTGPYN-FHDKVFENEINQLIESSREAFSATLFKAALKSCFYDLQNARDWYREVTADRKMHRDLVCRWIETQVLLLATFAPHWSEHIWLTTLKKPQSIHVSGRFPQVSSP------VNTALSNSLLYIRTLSRVIREAEAAQLKRQKKG 947          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_YEAST (Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=CDC60 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.132e-28
Identity = 79/209 (37.80%), Postives = 115/209 (55.02%), Query Frame = 3
Query:    3 DATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTP-DLILKSANKYLQDSIVLMRKLLQKQILGSKKAHKKGAPVATLTEDKLKGLV 626
            DA R + ADAGD V+DANF    AN  ILRL     W EE+   ES+LRTG  + + D  FE+E+N  +E T + Y    ++ ALK G +D QAARD YR + G   +++DL+ R+++ Q  L+ PI PH+AEY++R +L        A +P    P D  + +A  YL++   L R + + +    KK   K A +      KL  L+
Sbjct:  750 DAARIAFADAGDTVEDANFDESNANAAILRLFNLKEWAEEITK-ESNLRTGEITDFFDIAFEHEMNALIEKTYEQYALTNYKNALKYGLFDFQAARDYYREASGV--MHKDLIARYIETQALLLAPIAPHFAEYIYREVLGNQTSVQNAKFPRASKPVDKGVLAALDYLRN---LQRSIREGEGQALKKKKGKSAEIDASKPVKLTLLI 952          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYL_AERPE (Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.854e-13
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = 3
Query:    3 DATRFS--LADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPST----YADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWP 458
            DATR++  LA A  G+DDANF    A++ +  L++ + ++ E          G P+     + DR FE+ +N  +    +  +   F+ AL   +Y LQ +   Y    G G    DL+ RF++VQT LI P  PH AE  W   + ++GFA  A WP
Sbjct:  658 DATRWAEVLAGADSGLDDANFEPSVADSAVSLLSQWLDFVRE--------NYGRPARREERWVDRWFESRLNSTIARVTRLMEEANFKTALVEAWYKLQESYRWYLRRSG-GEPREDLLRRFIEVQTLLIAPFAPHTAEEAWEA-MGREGFASTASWP 805          
BLAST of EY680038 vs. ExPASy Swiss-Prot
Match: SYLC_ENCCU (Probable leucyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0280 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 41/141 (29.08%), Postives = 72/141 (51.06%), Query Frame = 3
Query:    6 ATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVES-------SLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYV 407
            +TR  LA  GDG +DANFV   AN  +L+L   +  +EE+    S        ++      +ADR     I++ V    + +++  +R+ +K GFY++  A++ Y +    GG N ++++      T+L+ PI P  A Y+
Sbjct:  566 STRMCLAVCGDGNEDANFVESNANAFVLKLYSYVKMIEELCTGRSLNPCILDLMKGYGEMGFADRFLMQTISMNVAHATRAHEDMTYRDVVKYGFYEMVHAKEMYHI---LGGTNNEILFLLCKAMTQLLYPIIPSLARYL 703          
The following BLAST results are available for this feature:
BLAST of EY680038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYLC_PONAB1.226e-4044.39Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYLC_MOUSE1.601e-4045.45Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]
SYLC_HUMAN2.091e-4044.39Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]
SYLC_CAEEL2.392e-3641.29Leucyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYLC_DICDI1.605e-3240.40Leucyl-tRNA synthetase, cytoplasmic OS=Dictyosteli... [more]
SYLC_NEUCR1.502e-3042.11Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora ... [more]
SYLC_SCHPO7.454e-3039.59Putative leucyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYLC_YEAST3.132e-2837.80Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYL_AERPE4.854e-1333.54Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS... [more]
SYLC_ENCCU7.750e-1129.08Probable leucyl-tRNA synthetase, cytoplasmic OS=En... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680038 ID=EY680038; Name=EY680038; organism=Citrus sinensis; type=EST; length=926bp
CAGATGCCACACGATTTTCTCTGGCTGATGCTGGAGATGGTGTAGATGAT
GCAAATTTCGTATTTGACACTGCAAATACTGGAATCCTTCGGCTCACCAA
GGAGATTGCATGGATGGAGGAGGTACTGGCTGTGGAATCGTCTTTGAGAA
CTGGTCCACCATCTACTTATGCTGATAGGGTGTTTGAGAACGAGATAAAT
ATTGCTGTTGAAATGACTGATCAGCATTACAAGAACTACATGTTCCGAGA
AGCTCTAAAAACGGGCTTTTATGATCTTCAAGCTGCAAGGGATGAATATA
GGTTGTCTTGTGGTGCGGGGGGTCTGAATCGGGATTTGGTGTGGCGTTTT
ATGGATGTGCAGACTCGGCTCATCACTCCAATCTGCCCTCATTATGCGGA
GTATGTTTGGAGGGTGATTTTGAAGAAGGATGGCTTTGCAGTGAAAGCTG
GTTGGCCAACATATGGCACTCCTGATCTGATCCTCAAGAGCGCCAATAAG
TATTTGCAGGACTCGATTGTTTTGATGAGGAAGCTGCTCCAAAAGCAAAT
TCTTGGATCAAAGAAAGCCCATAAGAAAGGTGCACCTGTTGCAACACTCA
CTGAGGACAAATTGAAGGGCTTGGTATATGTGAAATGAACCAATTTTGAT
GGAAGGAAAAACAAAATTGCTTTGAAGGATACTGCAAAGCAAATTCAATA
GTAAAAATCTTACTTTTGCTCCCGATGGGGAAAATTTGAAGGGTTTGCAA
AACAACTCCATTTGGACAGGTTTCAAACTTTTAAACCAAACCCAAAAATC
TTTTTATGCCCTTTTTTTTGAGTTTACAAAAAGGAGGAAACGAAAGCCTT
TTGGGGCCCCAGGGGCTTGTGATTTTAAACCCTCCCCTTTTTGAGAAAAA
ATGAGGGTCCTCTTCCAGGAAAAACA
back to top