EY679993

Overview
NameEY679993
Unique NameEY679993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679993 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.217e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 3
Query:    3 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 131
            RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct:  117 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of EY679993 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 3
Query:    3 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 131
            RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct:  117 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of EY679993 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 128
            RVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct:  117 RVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of EY679993 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.500e-13
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 3
Query:    3 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 131
            RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:  117 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159          
BLAST of EY679993 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 131
            RVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:  117 RVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of EY679993 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 3
Query:    3 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 131
            RVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:  117 RVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
The following BLAST results are available for this feature:
BLAST of EY679993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RS11_EUPES4.217e-1695.3540S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN7.194e-1695.3540S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE6.733e-1488.1040S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH1.500e-1386.0540S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH3.342e-1386.3640S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH9.723e-1386.0540S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-C06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679993 ID=EY679993; Name=EY679993; organism=Citrus sinensis; type=EST; length=864bp
TCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTTG
TCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTTC
TGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCGGCTGTT
TCCAACATTAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTATTTGG
ATTTTTGCATTGGGAATTAAATCCTGTTATGTCCTAATATATATTTTCTA
GAGAAGTTAATTTTTCCTTTTGCTTGTTAGTATTTTCTTTGGTTTGGTTA
TGACATTGTTTTATTCCATATTTGTTCAATGGGATGAATGCGTAGTGACT
CTGTTATTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAGAAAGAAAAAGAAAGGGTGAAAGTGGAGAAACAAAAAAAAAAAGNGCG
AGGGGAGATGCCAGGGAAATGAAAGCGATTGATGGGGGGGGGCGCCTGCC
CTTAGGATCGCAACTTTTTTGAACATCGCGCGGACCCCAGTGAACCTCCC
CCGATAAGGGCCCAAAATAATATACTCATAACCGACCGTTATTGATGAAC
ACCGCCTATGATGGAAGAAACACGTGTTTTACCTTCATCATACTATCCTT
GTGCACGATATCTCCCTCTTGACGGGGGAGAGATGATAACAAAAAAGTAC
CGAACACACACCCCCTCCTCAGCTACCGCTGCCGCGATAGGATCGAAAAA
GGGGACGCCCCCCCGCGCTACGCCAATCGCAACGGCAGGGGTGGTGGAGA
TAAAAAATCCAGAA
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