EY679981

Overview
NameEY679981
Unique NameEY679981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB1_ARATH (Ferredoxin-dependent glutamate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=GLU1 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.652e-51
Identity = 96/114 (84.21%), Postives = 106/114 (92.98%), Query Frame = 1
Query:    1 CVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEYVRTATGEVTLQSA 342
            CVVVLGKVGRNVAAGMTGGLAY+LDEDDTL+PK+N+EIVK+QRV AP G++QLKSLIEAHVEKTGSSKG+ IL EW+ YLPLFWQLVPPSEEDTPEA A YVRT+TGEVT QSA
Sbjct: 1535 CVVVLGKVGRNVAAGMTGGLAYLLDEDDTLLPKINREIVKIQRVTAPAGELQLKSLIEAHVEKTGSSKGATILNEWEKYLPLFWQLVPPSEEDTPEASAAYVRTSTGEVTFQSA 1648          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_SPIOL (Ferredoxin-dependent glutamate synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.215e-48
Identity = 94/114 (82.46%), Postives = 104/114 (91.23%), Query Frame = 1
Query:    1 CVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEYVRTATGEVTLQSA 342
            CVV+LGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVK+QRV APVGQMQLK+LIEAHVEKTGSSKG++ILK+WD YLPLFWQLVPPSEEDTPEA A + +  +   +LQSA
Sbjct: 1404 CVVILGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKIQRVTAPVGQMQLKNLIEAHVEKTGSSKGASILKDWDKYLPLFWQLVPPSEEDTPEASAMFEQMTSEGASLQSA 1517          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_MAIZE (Ferredoxin-dependent glutamate synthase, chloroplastic OS=Zea mays GN=GLSF PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.216e-46
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    1 CVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEYVRTATGEVTLQ 336
            CVVVLGK GRNVAAGMTGGLAYILDEDDTL+PKVNKEIVK+QRV AP GQMQLK LIEA+VEKTGS KG AIL+EW+ YLPLFWQLVPPSEED+PEACAE+ R    + T Q
Sbjct: 1501 CVVVLGKAGRNVAAGMTGGLAYILDEDDTLVPKVNKEIVKMQRVNAPAGQMQLKGLIEAYVEKTGSEKGIAILREWEAYLPLFWQLVPPSEEDSPEACAEFERVLAKQATTQ 1612          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB2_ARATH (Ferredoxin-dependent glutamate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=GLU2 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.375e-44
Identity = 84/109 (77.06%), Postives = 101/109 (92.66%), Query Frame = 1
Query:    1 CVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEYV-RTATGE 324
            CVV+LGKVGRNVAAGMTGGLAYILDED+TL+PK+NKEIVK+QRV +PVGQ QLKSLI+AHVEKTGSSKG+ I++EWD YL +FWQLVPPSEEDTPEA ++++ +T TG+
Sbjct: 1510 CVVILGKVGRNVAAGMTGGLAYILDEDNTLLPKMNKEIVKIQRVTSPVGQTQLKSLIQAHVEKTGSSKGAMIVEEWDKYLAMFWQLVPPSEEDTPEANSDHILKTTTGD 1618          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTS_SYNY3 (Ferredoxin-dependent glutamate synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gltS PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.034e-29
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEYVRTATGEVTLQS 339
            +VVLG VGRNV AGMTGGLAY LDE   L  K+N EI+ +QR+ A  G+ QLKSLI AHVE TGS KG AIL  W  YL  FWQ VPPSE+D+PEA  +   + TGE TL S
Sbjct: 1446 IVVLGPVGRNVGAGMTGGLAYFLDEVGDLPEKINPEIITLQRITASKGEEQLKSLITAHVEHTGSPKGKAILANWSDYLGKFWQAVPPSEKDSPEANGDV--SLTGEKTLTS 1555          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_PORYE (Ferredoxin-dependent glutamate synthase OS=Porphyra yezoensis GN=gltB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.764e-29
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEY 303
            +VVLGK GRNV AGMTGGLAY LDED+  I +VN EIVK+QRVI   G+ QLK+LIE H  KTGS K   IL++W++YLP FWQ+VPPSE +  E    Y
Sbjct: 1431 IVVLGKAGRNVGAGMTGGLAYFLDEDENFIDRVNSEIVKIQRVITKAGEEQLKNLIENHAAKTGSLKAHTILEKWNSYLPQFWQVVPPSEANIDETNPTY 1530          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_PORPU (Ferredoxin-dependent glutamate synthase OS=Porphyra purpurea GN=gltB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.929e-29
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEY 303
            +VVLGK GRNV AGMTGGLAY LDE++  I +VN EIVKVQRVI   G+ QLK+LIE H  KTGS K   IL+ W+TYLP FWQ+VPPSE +  E    Y
Sbjct: 1431 IVVLGKAGRNVGAGMTGGLAYFLDEENKFIERVNSEIVKVQRVITKAGEQQLKNLIENHSAKTGSLKAHNILENWNTYLPQFWQVVPPSEANIEETNTAY 1530          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_CYACA (Ferredoxin-dependent glutamate synthase OS=Cyanidium caldarium GN=gltB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.667e-25
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPE 288
            VVVLGK GRN+AAGMTGG+AY LDE   L  KVN +IV++QRV+    + QL  LIE HV KTGS K   IL++W+ ++  FWQ+VPPSE +T E
Sbjct: 1443 VVVLGKAGRNIAAGMTGGIAYFLDEYSNLPEKVNLDIVRIQRVVTNEARKQLIQLIEKHVLKTGSKKAVLILQQWEIFIHYFWQIVPPSESETSE 1537          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_ANTSP (Ferredoxin-dependent glutamate synthase OS=Antithamnion sp. GN=gltB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.938e-21
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEE 276
            +VVLG  GRN+ AGMTGG+AY LDED+TL  K+N EIVK QR++    + QLK+++E +  KT S K   IL  W  YL  F+Q+VPPSE+
Sbjct: 1431 IVVLGTFGRNIGAGMTGGIAYFLDEDNTLKNKLNTEIVKAQRLLTKESEEQLKNIMELYEIKTKSEKAKLILDNWSQYLAKFYQIVPPSEQ 1521          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_AZOBR (Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense GN=gltB PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    7 VVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVP 264
            V+LG+VG N AAGMTGG+AY+ D DD+L   +N E V  QR+     + QLK LIE HV +T S   + IL +W   +  FWQ+VP
Sbjct: 1410 VILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWAREVTKFWQVVP 1495          
The following BLAST results are available for this feature:
BLAST of EY679981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GLTB1_ARATH3.652e-5184.21Ferredoxin-dependent glutamate synthase 1, chlorop... [more]
GLTB_SPIOL2.215e-4882.46Ferredoxin-dependent glutamate synthase, chloropla... [more]
GLTB_MAIZE1.216e-4680.36Ferredoxin-dependent glutamate synthase, chloropla... [more]
GLTB2_ARATH7.375e-4477.06Ferredoxin-dependent glutamate synthase 2, chlorop... [more]
GLTS_SYNY31.034e-2961.61Ferredoxin-dependent glutamate synthase 2 OS=Synec... [more]
GLTB_PORYE1.764e-2962.00Ferredoxin-dependent glutamate synthase OS=Porphyr... [more]
GLTB_PORPU3.929e-2963.00Ferredoxin-dependent glutamate synthase OS=Porphyr... [more]
GLTB_CYACA7.667e-2557.89Ferredoxin-dependent glutamate synthase OS=Cyanidi... [more]
GLTB_ANTSP3.938e-2153.85Ferredoxin-dependent glutamate synthase OS=Antitha... [more]
GLTB_AZOBR1.227e-1448.84Glutamate synthase [NADPH] large chain OS=Azospiri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-B06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679981 ID=EY679981; Name=EY679981; organism=Citrus sinensis; type=EST; length=808bp
TGTGTCGTTGTACTTGGAAAAGTGGGTAGAAATGTTGCTGCTGGAATGAC
TGGAGGTTTGGCATACATTCTCGATGAGGATGATACTCTCATCCCCAAGG
TCAATAAGGAGATAGTGAAGGTCCAGAGGGTGATTGCTCCTGTTGGCCAG
ATGCAGTTGAAGAGCCTTATTGAAGCCCATGTTGAAAAAACTGGCAGCAG
CAAAGGCTCTGCTATTCTCAAGGAATGGGATACGTATCTACCGCTCTTCT
GGCAGCTGGTTCCACCTAGCGAAGAAGACACCCCAGAGGCTTGTGCAGAG
TATGTAAGAACAGCTACTGGGGAGGTGACATTGCAGTCAGCTTAGGACAA
CAATTTGACATTATACGATGGCCTCGAGGCCTGCATGCAAAGCCAGAAAA
TTCCAATCACACCTTGTACAATTCAAACAGAGAGATTGATTTTTGAAATT
GGAATTCTGCATCGATGAGAGGGAGACTCGAAATTTCACCTTGAAAAGCA
GCTTTGAATATTTATTGGCAAAAAAACCATCATATTTGGATTTGATTTGT
TGGTAAGAAAAAATTCCTTTACCTCAATATTACCGCAATTTGTAAAGGGA
ATTGGGGGAAAACGGTAAATGTAAGTTTTAGGTTTTTTCCCATTCTTGGC
CAGGGCAACATAATGGGTTTTTGGTATAAATTTGTAAACCCTTTGGGAGC
CTTTTTTAAAGGGGGGGGCCCCTTGGCATAGATATTTAACCCAATATGAA
TTTTTCCTAAACCCCCAATTTCTTTTGTGAATTCCCACGCCTTTCCAAAC
TTTTGTGT
back to top