EY679972

Overview
NameEY679972
Unique NameEY679972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679972 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:  196 RAMSLVRSHASFGQNFFMVIVRFLETFVGSMSAGVGVGFISA 321
            R MSLVRSH+S GQNFFMVIVRFLETFVGSMSAGVGVGF SA
Sbjct:  202 RTMSLVRSHSS-GQNFFMVIVRFLETFVGSMSAGVGVGFTSA 242
The following BLAST results are available for this feature:
BLAST of EY679972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NHX6_ARATH5.079e-1290.48Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-A08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679972 ID=EY679972; Name=EY679972; organism=Citrus sinensis; type=EST; length=889bp
CCAATTTTCTTGCGAGTGAATTTTCTGTTTTATCCTAATAAACATTTAAC
GTGTGAGAATTGATCTTTTTCTATGTGTCACAAATGGTAGATGGCGATAT
CCTTGTACCGGTATGTAAAATTTGCATTTGTCATAACCAGTTAGTTCATT
ATGTGGGTTAAGATTTGGGATTGAAGTAAGCTGTTCTTGATATGTAGGGC
AATGTCCTTAGTGAGAAGTCATGCTTCATTTGGGCAAAATTTCTTTATGG
TGATTGTCAGGTTTCTTGAGACCTTTGTTGGCTCAATGTCTGCAGGTGTT
GGAGTTGGATTTATTTCTGCTTTGATATCCTTTTTTTTTTGGGGCTTTAT
TGATTAAATTTGTTGCACTGACTTTTATCTATTAGAATGTTTTGTGAAAC
CTTAATTCCCTGAACCTTTTCAAGTATGCCAGATTGGATATTGACAAGTG
AGTACTGCATATTATTATTTATTCTAAGGCCAAAAATCCATCGTGCATAA
GAAGATCCTGATTAAAACATTTTGCTGTGATTCTCTTTTCACTAGCCAGA
ACTTAGAGTGTTGTCTCTTTGTTCTTTTTCCATATTTCTCGTAATTAGAT
AGTGAGGGAATTTGAGGATTGGACTAAGAAATCCTCGAGGAAAAATAGTG
GCTTACAAACTGTTGAAATGAAGATGCCAAAAATTTTCCAAATCTGGTCA
AAAAAATGGAATTTGCCAACCAGGCTGTGGTACTCCAAAAAAAAAAAGGG
TCCCTGGAACCGGGAAAAAAAGGGAAAAATTCCCCCAAAAAATGAAAAAA
ACGGAAAAAATGCGAATTATCAACGGGTGGCCCCCCCCCGAAAAAAAAAA
CCCCCCTTTGGGGAACCAAAAAAAAAAGGGTATTGGGAA
back to top