EY679955

Overview
NameEY679955
Unique NameEY679955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679955_ssr399 microsatellite EY679955_ssr399:399..408. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD_ORYSJ (Probable AMP deaminase OS=Oryza sativa subsp. japonica GN=AMPD PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.528e-25
Identity = 50/63 (79.37%), Postives = 59/63 (93.65%), Query Frame = 3
Query:    3 LIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            LIQGRFLAE+TK+V  DLEASKYQMAEYR+SIYGRK+SEWDQ+ASW +NNE+YSEN +WLIQ+
Sbjct:  461 LIQGRFLAELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQI 523          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD_ARATH (AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.123e-24
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 LIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            LIQGRFL E+TKQV  DLEASKYQMAEYR+SIYGRK SEWDQLASW +NN++YSEN +WLIQ+
Sbjct:  485 LIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQL 547          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD_DICDI (AMP deaminase OS=Dictyostelium discoideum GN=amdA PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.969e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 3
Query:    3 LIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            LI+G++LAE++K+V  DLE+SKYQ AEYR+SIYGRK SEWD LASW ++N+++S    WLIQV
Sbjct:  315 LIKGKYLAEISKEVFTDLESSKYQCAEYRLSIYGRKMSEWDTLASWIVDNDLFSTKVRWLIQV 377          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD_SCHPO (AMP deaminase OS=Schizosaccharomyces pombe GN=ada1 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.877e-18
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 3
Query:    6 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            I GR+LAE+TK+V  DL   KYQMAEYR+SIYGR + EWD+LA+W I+NE++S N  WLIQV
Sbjct:  429 INGRYLAELTKEVFTDLRTQKYQMAEYRISIYGRNREEWDKLAAWIIDNELFSPNVRWLIQV 490          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD_YEAST (AMP deaminase OS=Saccharomyces cerevisiae GN=AMD1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.629e-16
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 3
Query:    6 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            I+G +LA++TKQV+ DLE SKYQ  EYR+S+YGR   EWD+LASW I+N++ S N  WL+Q+
Sbjct:  457 IKGTYLADITKQVIFDLENSKYQNCEYRISVYGRSLDEWDKLASWVIDNKVISHNVRWLVQI 518          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD2_MOUSE (AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.601e-14
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 3
Query:    6 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            I G++ A + K+V+ DLE SKYQ AE R+SIYGR + EWD+LA W +N++++S N  WL+QV
Sbjct:  433 ISGKYFAHIIKEVMADLEESKYQNAELRLSIYGRSRDEWDKLARWAVNHKVHSPNVRWLVQV 494          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD2_RAT (AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.436e-14
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 3
Query:    6 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            I G++ A + K+V+ DLE SKYQ AE R+SIYGR + EWD+LA W +N+ ++S N  WL+QV
Sbjct:  459 ISGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVNHRVHSPNVRWLVQV 520          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD2_HUMAN (AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.905e-13
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 3
Query:    6 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            + G++ A + K+V+ DLE SKYQ AE R+SIYGR + EWD+LA W + + ++S N  WL+QV
Sbjct:  513 VSGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVMHRVHSPNVRWLVQV 574          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD1_RAT (AMP deaminase 1 OS=Rattus norvegicus GN=Ampd1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.083e-12
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 3
Query:    6 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            I G + A + K+V  DL  +KYQ AE R+SIYGR   EW +L+SWF+ N IY  N  W+IQV
Sbjct:  398 INGEYFATIIKEVGADLVDAKYQHAEPRLSIYGRSPDEWSKLSSWFVGNRIYCPNMTWMIQV 459          
BLAST of EY679955 vs. ExPASy Swiss-Prot
Match: AMPD1_MOUSE (AMP deaminase 1 OS=Mus musculus GN=Ampd1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.250e-12
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 3
Query:    6 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQV 191
            I G + A + K+V  DL  +KYQ AE R+SIYGR   EW++L+SWF+ N IY  N  W+IQV
Sbjct:  396 INGEYFATIIKEVGADLVEAKYQHAEPRLSIYGRSPDEWNKLSSWFVCNRIYCPNMTWMIQV 457          
The following BLAST results are available for this feature:
BLAST of EY679955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMPD_ORYSJ9.528e-2579.37Probable AMP deaminase OS=Oryza sativa subsp. japo... [more]
AMPD_ARATH2.123e-2479.37AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1... [more]
AMPD_DICDI2.969e-1863.49AMP deaminase OS=Dictyostelium discoideum GN=amdA ... [more]
AMPD_SCHPO3.877e-1864.52AMP deaminase OS=Schizosaccharomyces pombe GN=ada1... [more]
AMPD_YEAST1.629e-1658.06AMP deaminase OS=Saccharomyces cerevisiae GN=AMD1 ... [more]
AMPD2_MOUSE2.601e-1453.23AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1[more]
AMPD2_RAT4.436e-1453.23AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2... [more]
AMPD2_HUMAN4.905e-1350.00AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2[more]
AMPD1_RAT7.083e-1251.61AMP deaminase 1 OS=Rattus norvegicus GN=Ampd1 PE=1... [more]
AMPD1_MOUSE9.250e-1251.61AMP deaminase 1 OS=Mus musculus GN=Ampd1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-H03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679955 ID=EY679955; Name=EY679955; organism=Citrus sinensis; type=EST; length=934bp
ATCTTATTCAAGGACGGTTTTTGGCGGAAGTAACAAAGCAAGTTTTATTG
GATCTTGAAGCTAGCAAATACCAGATGGCAGAATACAGGGTGTCTATATA
TGGTAGGAAACAAAGTGAATGGGACCAGCTGGCAAGCTGGTTCATCAACA
ATGAAATTTACAGTGAGAATGCTATTTGGTTAATCCAGGTATCTATAATG
CTGATGCTTTCTTCTTTCTAGTGGCCTCCATAGTTTGTGCAGTTAACTTT
CTTTCTGACTGATTTTGACAGCATGCTTCTATGAAAGATTGTATAGGGTA
ATATCTGTACATCTGTTGCGCCCCTTTGGTATCTGCTTAATTAGGTTTTT
CACTTACATTAACTGGAGGAGCTGCAGGTACAAGAAAGCTCCTTGGTTGA
GAGAGAGAGGCATGGAATTCCAATTAGAATCTAAGAATAGCTTCCCTTGG
GACGTCAAAAAAAAAAAAAAAAAGTTACCTCCTTTTGCCCATATTTTGTG
TGGAATTCTGAGACTACTACGTGTTAATGTTGTGTTTCTAACACATGCCC
TTTTATTTTCGAATTCAATTTGCAGCTACCACGACTATACAATGTATACC
AACCAAATGGGCATTGTTAAAATCTTTTCCAAAATATTAATTGATAATGG
TGTTCCTTCCCCTATTTGAAGTCCCAATTGATCCCAAACCTCCCACCCTC
AACTTCATGTTGTCCCGGTTGAAGGGTTGTGGGGTTTTTGACCCTTGAAA
ATAATAAAAATAAACCAAAAAAAACTTCCAAAAAAACCCCATGCCCCCAA
CCCGGGCAAAATGGACCCAATAATTTCCACCCCGGGTTTCCCCTTATTAA
ACTTTATTTTTTTTCCTTCCAAAAATTTTTAAACTCCTCAAACAACCTTT
CCGAAAAACCAAGGGGAAAGGCGCACAATATTTA
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