EY679953

Overview
NameEY679953
Unique NameEY679953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.493e-65
Identity = 138/216 (63.89%), Postives = 163/216 (75.46%), Query Frame = 3
Query:  123 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWC 761
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHIT+NF+SLP  +  L   ++G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   I KKGK  C
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAADIIKKGKMCC 224          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.493e-65
Identity = 138/216 (63.89%), Postives = 163/216 (75.46%), Query Frame = 3
Query:  123 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWC 761
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHIT+NF+SLP  +  L   ++G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   I KKGK  C
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAADIIKKGKMCC 224          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.087e-64
Identity = 134/220 (60.91%), Postives = 163/220 (74.09%), Query Frame = 3
Query:  123 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWCAP*LNE 779
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT KDRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN MDG YIAPAFMDKLVVHIT+NFM+LP  +  L   ++G  KG+ KSFQCELVF KM I+PI+ +  ++E     E P K I+ +   RE   I +KGK  CA  +N+
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWG-GKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGE-PAKLIRQR--YREAADIIRKGK-MCALFIND 229          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.696e-62
Identity = 132/214 (61.68%), Postives = 157/214 (73.36%), Query Frame = 3
Query:  126 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGK 752
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI +NFM+LP  +  L   V+G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   + KKGK
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREASDLIKKGK 225          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.821e-61
Identity = 135/223 (60.54%), Postives = 163/223 (73.09%), Query Frame = 3
Query:  126 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWCAP*LNE 779
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT KDRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHIT+NFM+LP  +  L   ++G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   +  KGK  CA  +N+
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAADLIAKGK-MCALFIND 231          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.548e-59
Identity = 132/229 (57.64%), Postives = 160/229 (69.87%), Query Frame = 3
Query:  108 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWC 761
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN MDG YIAPAFMDKLVVHIT+NF++LP  +  L   ++G  KG+ KSFQCELV  KMGINPI+ +  ++E     E P K I+ +   RE   + KKGK  C
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWG-GKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAADLIKKGKMCC 224          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.449e-59
Identity = 128/218 (58.72%), Postives = 153/218 (70.18%), Query Frame = 3
Query:  123 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWC 761
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHIT+NF+ LP  +  L   ++G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   I +KG   C
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWG-GKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAAEIIRKGNMCC 228          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.919e-58
Identity = 127/222 (57.21%), Postives = 153/222 (68.92%), Query Frame = 3
Query:  111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWC 761
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHIT+NF+ LP  +  L   V+G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   I +KG   C
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAAEIIRKGNICC 228          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.494e-58
Identity = 125/221 (56.56%), Postives = 153/221 (69.23%), Query Frame = 3
Query:  102 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWC 761
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT+KD+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI +NF++LP  +  L   V+G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   I KKGK  C
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAADIIKKGKMCC 221          
BLAST of EY679953 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.391e-57
Identity = 125/220 (56.82%), Postives = 157/220 (71.36%), Query Frame = 3
Query:  111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITQNFMSLPKSRF-LSSWVYGEAKGKEKSFQCELVFPKMGINPIIKNGRKIERWQWREKPPKFIQGKGYVRETKIIQKKGKSWC 761
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHIT+NF++LP  +  L   V+G  KG+ KSFQCELVF KMGINPI+ +  ++E     E P K I+ +   RE   I +KG   C
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE-PAKLIRQR--YREAAEIIRKGNMCC 223          
The following BLAST results are available for this feature:
BLAST of EY679953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA2_LARTR5.493e-6563.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR5.493e-6563.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.087e-6460.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU9.696e-6261.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.821e-6160.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.548e-5957.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.449e-5958.72Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.919e-5857.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA8.494e-5856.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN9.391e-5756.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-G11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679953 ID=EY679953; Name=EY679953; organism=Citrus sinensis; type=EST; length=930bp
CCCACGCGTCCGCACGCACCCAGCGCATTGCTTCGCTTTCCTTTGCCTGC
ATTGCAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGC
TAGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTG
CAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTA
AGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTAC
TGCTGAAGTCGATGAGAACAAGCAGACCAAGAAGGACAGATGGAAGGGCC
TTGCCTACGACGAATCTGATGACCAGCAAGACATCACCAGAGGAAAAGGT
GCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGC
TGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACT
TGGACAACACGATGGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAG
CTTGTTGTTCACATCACCCAAAACTTCATGTCCCTGCCAAAATCAAGGTT
CCTCTCATCTTGGGTATATGGGGAGGCAAAGGGCAAGGAAAAATCATTCC
AATGTGAGCTTGTTTTCCCCAAAATGGGAATCAACCCAATTATAAAGAAT
GGCCGGAAAATTGAAAGGTGGCAATGGCGGGAAAAACCCCCTAAATTTAT
ACAAGGCAAAGGATACGTGAGGGAAACCAAAATTATCCAAAAAAAGGGAA
AAAGTTGGTGTGCCCCATGATTAAATGAATTTTAGAGTCAGGAACCTGGT
ATCTAAAGGAGGGGGAACCATCGCCCTTTAATCCTTTTAATACAAACCCA
AATATGGTTTTAAACTCACCCGCACCAATAAGAACTTTTGCACTAAAAAC
ACTTCACCCTTTATATTGCTCCCAAATCCC
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