EY679949

Overview
NameEY679949
Unique NameEY679949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1008
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679949 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.400e-18
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    4 SSLSLKPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 192
            SS++LKPA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK K
Sbjct:    8 SSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGK 73          
BLAST of EY679949 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.353e-17
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    4 SSLSLKPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 192
            SS++LKPA FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GVNG MDLR+G+DASGRK K
Sbjct:    8 SSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGK 74          
BLAST of EY679949 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.024e-16
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   10 LSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 192
            +SLKPAPF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG+NG M LR+G+DASGRK K
Sbjct:    6 MSLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQK 69          
BLAST of EY679949 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.946e-15
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    4 SSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 192
            SSLSLKP  FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK K
Sbjct:    7 SSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPK 71          
BLAST of EY679949 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.854e-14
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    4 SSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 192
            SSLSLKP  FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK K
Sbjct:    7 SSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPK 71          
BLAST of EY679949 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.209e-11
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    4 SSLSLKPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRK 186
            SSLSLKP+ F V+ KSA +GLPSL+++S  F + A G  KIK DKP G+ GGM LR+G+D+SGRK
Sbjct:    7 SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRK 71          
The following BLAST results are available for this feature:
BLAST of EY679949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSBR_ARATH4.400e-1874.24Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM6.353e-1770.15Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC7.024e-1665.63Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU5.946e-1566.67Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC3.854e-1465.15Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL5.209e-1160.00Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-G07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679949 ID=EY679949; Name=EY679949; organism=Citrus sinensis; type=EST; length=1008bp
GCTTCTTCGTTGAGCCTGAAACCAGCTCCTTTCACTGTGGAGAAATCAGC
AGCGAGAGGCCTTCCCTCTCTTGCTAAAACTTCATTCAAAATTGTGGCTA
AAGGCGGCAAGATCAAAACCGACAAACCCTATGGAGTAAATGGTGGTATG
GATTTGAGGGAAGGTCTGGATGCATCCGGCAGGAAGGCTAAGGTTTGTGT
CCAGCAATTTTGTCATTTTATTTATGTACTCTTTTTAGATAAATTCTTCT
AGCTGCTTCTCTCTCGAGTCCATTACTTCAATTTCTCTAAGTTTTTTGTT
TTGCTAAAATATTTTATAATTTTTTCACATGTTCTCTTACTTGAGTATCA
ATTTCTTTGTTGTCATTGATACTACTGAACATTTCATCTTGTTTCATTTG
TAGTATAAGTTCCTTAATCCACAACCTTTGATTTCAGGCGAATTATTTCG
TAATATACCTCCAAATTAACTGTTTCTTTGCTACAACTTATATTCCACAG
CTAACTGCTTTTGCACCTTCCTTGCCAATTTCGCACTCCATCTGGAAATT
TTTAATAATTACTTCTCTAACTTAATACCATAAAGTTATTCCTTATAAAT
CGTAAAGTCATTTTCCATATCATTTTCGACTACAACAACATCCTAACGGC
TGGCTCTTCCTACATAAACCAAAAATTTACTAAACCTTCCATTTGAAAAT
CATAACCGCTTTTTAAAATCACCACGAAAAATTCTATCTAACAATGCTCC
CGCTATTACAACCACTAATCACATATGTAAAATCCCAGATAATTTTCTTC
TACTTTCAAACACCTTTGGACACAACCATTCGTCCCTCTCCTTTCAATTA
CTTGTTAGAATAAGAATAATATATATCACTCCAACCATCAACAACTGTAA
TCCCCAACTCAGTCATCCTCAAACATTGAACCTTACGTACAACCTCATGA
TGGCCCTCCCGCCACTCAGCCATCATCACCTGTATCTAAAATTTTTTAAC
AAAACCTT
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