EY679942

Overview
NameEY679942
Unique NameEY679942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679942_ssr428 microsatellite EY679942_ssr428:428..437. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.488e-22
Identity = 57/171 (33.33%), Postives = 97/171 (56.73%), Query Frame = 3
Query:    6 LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILVS 491
            LEL+  LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S    +  G L + + G W PH +   +A   +++++ WDLRSM +   IE+AH   VR++D++  K++ L +  D+  +  WD+R +  P++ L  H+HW W+V  N  +D  +L +
Sbjct:  123 LELLCHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDVRHISEPVKCLEEHSHWVWSVRYNHSHDQLLLTA 291          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_RAT (Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.645e-22
Identity = 56/168 (33.33%), Postives = 92/168 (54.76%), Query Frame = 3
Query:    6 LELIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 485
            LEL+  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  123 LELLCHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLKFTSG-RWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_MOUSE (Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.260e-21
Identity = 55/168 (32.74%), Postives = 92/168 (54.76%), Query Frame = 3
Query:    6 LELIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 485
            LEL+  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + + G W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  123 LELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_PONAB (Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.645e-21
Identity = 59/169 (34.91%), Postives = 93/169 (55.03%), Query Frame = 3
Query:    6 LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 485
            LEL+  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L
Sbjct:  150 LELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTSG-RWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVL 316          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_HUMAN (Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.645e-21
Identity = 59/169 (34.91%), Postives = 93/169 (55.03%), Query Frame = 3
Query:    6 LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 485
            LEL+  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L
Sbjct:  123 LELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTSG-RWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVL 289          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.165e-21
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = 3
Query:    6 LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 485
            LEL+  LD  AH G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + SG  W PH +   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  123 LELLCHLDNTAH-GNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQLRFTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.165e-21
Identity = 54/168 (32.14%), Postives = 92/168 (54.76%), Query Frame = 3
Query:    6 LELIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 485
            LEL+  LD+   G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + SG  W PH +   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  123 LELLCHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLRFTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_MACFA (Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.819e-20
Identity = 57/169 (33.73%), Postives = 92/169 (54.44%), Query Frame = 3
Query:    6 LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 485
            LEL+  LD  AH   + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + SG  W PH +   VA   +++++ WD R+M +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L
Sbjct:  123 LELLCHLDNTAH-SNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQLKFTSG-RWSPHHNCTQVATANDTTLRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVL 289          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_GECJA (Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.103e-20
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = 3
Query:    6 LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILVS 491
            LEL+  LD  AH G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L + SG  W PH +   VA   +++++ WD+R+M +   IE AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L +
Sbjct:  123 LELLCHLDNTAH-GNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQLKFTSG-RWSPHHNCTQVATANDTAIRGWDIRTMSQIYCIESAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVSDPVKTLEEHSHWVWNVRYNHSHDQLVLTA 291          
BLAST of EY679942 vs. ExPASy Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.431e-19
Identity = 52/165 (31.52%), Postives = 92/165 (55.76%), Query Frame = 3
Query:    6 LELIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILVS 491
            +E +  L  H G I  +L   SG ++ ++S+D+ NI LWS    ++N     KQ  G L  LS G+ +P+  N +A   + +++ WD R+  +T S++ AH   +R++D++  K + L++A D+  + +WD R  + P++   GH HW W+   N  +D  I+ S
Sbjct:  130 IEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRLWS-KIDDQNEPTVIKQF-GNLSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFSMDKAHSEQIRDIDFNPNKPYYLLSAGDDCKLKIWDTRQTRDPVKIFSGHNHWIWSAKFNRYHDQLIITS 292          
The following BLAST results are available for this feature:
BLAST of EY679942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TSSC1_DANRE1.488e-2233.33Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1[more]
TSSC1_RAT9.645e-2233.33Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 S... [more]
TSSC1_MOUSE1.260e-2132.74Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1[more]
TSSC1_PONAB1.645e-2134.91Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1[more]
TSSC1_HUMAN1.645e-2134.91Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2[more]
TSSC1_XENTR8.165e-2133.14Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 ... [more]
TSSC1_XENLA8.165e-2132.14Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_MACFA1.819e-2033.73Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2... [more]
TSSC1_GECJA3.103e-2032.75Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=... [more]
TSSC1_DICDI3.431e-1931.52Protein tssc1 homolog OS=Dictyostelium discoideum ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-F12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679942 ID=EY679942; Name=EY679942; organism=Citrus sinensis; type=EST; length=915bp
CTCAGTTGGAGCTTATCGCCGCTCTTGATGCACATGTTGGTAAGATTAAT
TGCGTTCTTTGGTGGTCATCTGGAAGACATGATAAATTGGTCAGCATAGA
CGAGGAAAATATTTTCTTGTGGAGCTTAGATTGTTCAAACAAGAATGCCC
AGGTACAATCTAAACAGTCATCTGGTATGCTGCATTATTTATCTGGTGGA
GCATGGGATCCGCATGATGTAAATGCTGTCGCAGCGACTTGTGAATCATC
AGTCCAGTTTTGGGATCTCAGATCAATGGGGAAGACAAATTCAATCGAGC
ATGCGCACGTCCGCAATGTGGACTATGACACCAAGAAAAAGCATTTACTT
GTTACTGCAGCAGATGAATCTGGGATACATTTATGGGATCTTAGAATGCT
GAAGGCACCTATCCAGGAACTCCCCGGACACACACACTGGACTTGGGCTG
TCTGCTGTAACCCTGAGTATGATGGATTTATTTTGGTAAGTCTTAATGGT
CTCTCAAGTGGTAGATAGTTTTACTGATCTTGAATGCCAGAAGAATCTCA
GATCTACTTATTCATCCTATGTGGTTCCTCTTTTTGGCACTCTTTTGTAG
CTATGGGAAAGTGGTTAGTTTTCCAGTTTTGAATACGATTGGCCCCATTC
ATGGGCTGGCTGAAAAAAATTCTTACATTTTAAGGGAAGGGGTATTCCTT
TGTTGAAAGTAATTTAAATGACTGAAAAAACTATTTGGGGGGCTTTAAAC
ATGGAAAAATTTTTAGCCGAAGTTTAAAATCCTGGGCAAATCCGCTGGGA
ACGAGCCCCACGTGGAAATTTTTAGGGTTGGGGTTCCCCCTTCTAAACCA
GGGTGGAATCTTCCCTCCCTAAAAAACTTTTATTTTTAAACAACCCAGAA
TCTCGGGTGGGTATA
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