EY679939

Overview
NameEY679939
Unique NameEY679939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.070e-68
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1
Query:  124 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            DKP + L+NG SLYYMSSLPNEAVY+KEK+GV WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWG
Sbjct:   15 DKPVKSLYNGGSLYYMSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWG 142          

HSP 2 Score: 31.9574 bits (71), Expect = 2.070e-68
Identity = 21/44 (47.73%), Postives = 24/44 (54.55%), Query Frame = 3
Query:  621 LSGFPSNFSVYTCIC*NLMKGSWAFDLPPGGASLHTANQTKTKK 752
            LSG P+NF VYT +     +   A DLP GG   H   QT TKK
Sbjct:  148 LSGSPANFQVYTALL-KPHERIMALDLPHGGHLSH-GYQTDTKK 189          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.012e-64
Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 1
Query:  124 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            DKP + LFNG  LY MSSLP+EAVYEKE+ GVTWPKQLNAPLEVVDPEIADIIE EKARQWKGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWG
Sbjct:   15 DKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWG 142          

HSP 2 Score: 31.5722 bits (70), Expect = 1.012e-64
Identity = 21/44 (47.73%), Postives = 23/44 (52.27%), Query Frame = 3
Query:  621 LSGFPSNFSVYTCIC*NLMKGSWAFDLPPGGASLHTANQTKTKK 752
            LSG P+NF VYT +         A DLP GG   H   QT TKK
Sbjct:  148 LSGSPANFHVYTALL-KAHDRIMALDLPHGGHLSH-GYQTDTKK 189          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.444e-63
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1
Query:  124 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            +K +RPLF+ SSLYY SSLP+EAVY+KE   VTWPKQLN+PLEV+DPEIADIIE EKARQWKGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWG
Sbjct:   15 NKSSRPLFSASSLYYKSSLPDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWG 142          

HSP 2 Score: 32.3426 bits (72), Expect = 2.444e-63
Identity = 22/44 (50.00%), Postives = 23/44 (52.27%), Query Frame = 3
Query:  621 LSGFPSNFSVYTCIC*NLMKGSWAFDLPPGGASLHTANQTKTKK 752
            LSG PSNF VYT +         A DLP GG   H   QT TKK
Sbjct:  148 LSGSPSNFQVYTALL-KPHDRIMALDLPHGGHLSH-GYQTDTKK 189          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 5.419e-63
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 1
Query:  124 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            DKP RPL   +S Y MSSLP+EAV EKE++ VTWPKQLNAPLE VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDPEKWG
Sbjct:   15 DKPIRPLIRSTSCY-MSSLPSEAVDEKERSRVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWG 141          

HSP 2 Score: 31.5722 bits (70), Expect = 5.419e-63
Identity = 21/44 (47.73%), Postives = 24/44 (54.55%), Query Frame = 3
Query:  621 LSGFPSNFSVYTCIC*NLMKGSWAFDLPPGGASLHTANQTKTKK 752
            LSG P+NF VYT +     +   A DLP GG   H   QT TKK
Sbjct:  147 LSGSPANFHVYTALL-KPHERIMALDLPHGGHLSH-GYQTDTKK 188          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.901e-61
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 1
Query:  124 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            +KP + LFNG  LY MSSLP+EAVYEKE+ GVTWPKQLNAPLEV DPEIADIIE EKARQWKGLELI SENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLD  KWG
Sbjct:   15 NKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPKQLNAPLEVGDPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWG 142          

HSP 2 Score: 31.5722 bits (70), Expect = 2.901e-61
Identity = 21/44 (47.73%), Postives = 23/44 (52.27%), Query Frame = 3
Query:  621 LSGFPSNFSVYTCIC*NLMKGSWAFDLPPGGASLHTANQTKTKK 752
            LSG P+NF VYT +         A DLP GG   H   QT TKK
Sbjct:  148 LSGSPANFHVYTALL-KAHDRIMALDLPHGGHLSH-GYQTDTKK 189          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.649e-32
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  247 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            +E VDPE+ DI+++EK RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGGNE+ID  E LCQKRALE F LDP KWG
Sbjct:   52 VEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWG 138          

HSP 2 Score: 28.1054 bits (61), Expect = 1.649e-32
Identity = 16/35 (45.71%), Postives = 20/35 (57.14%), Query Frame = 3
Query:  621 LSGFPSNFSVYTCIC*NLMKGSWAFDLPPGGASLH 725
            LSG P+NF+VYT I  +  +     DLP GG   H
Sbjct:  144 LSGSPANFAVYTAIVGSNGR-IMGLDLPDGGHLTH 177          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 8.040e-32
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  247 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            +E +DPE+ +I+++EK+RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGGNE+ID  E LCQKRALE F LDP KWG
Sbjct:   56 VEKIDPEVFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMEILCQKRALEVFGLDPAKWG 142          

HSP 2 Score: 27.335 bits (59), Expect = 8.040e-32
Identity = 15/35 (42.86%), Postives = 18/35 (51.43%), Query Frame = 3
Query:  621 LSGFPSNFSVYTCIC*NLMKGSWAFDLPPGGASLH 725
            LSG P+NF+VYT +           DLP GG   H
Sbjct:  148 LSGSPANFAVYTALV-GANGRIMGLDLPDGGHLTH 181          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.834e-29
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  229 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            K L APL   DP +  I+E EK+RQ + + LI SENFTS +VM A+GS+M NKYSEGYPGARYYGGNE+ID AE LCQ RALEAF LD EKWG
Sbjct:   12 KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPGARYYGGNEFIDQAERLCQTRALEAFHLDGEKWG 104          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.087e-29
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  235 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            L+  ++  DPE+ DI+  E++RQ + + LIPSENFTSV+VM  +GS M NKYSEGYPG RYYGGN+YIDMAESLCQKRALE + LDP KWG
Sbjct:   36 LSQHVQEFDPEMYDILTKERSRQKRSITLIPSENFTSVAVMNLLGSEMQNKYSEGYPGQRYYGGNQYIDMAESLCQKRALELYGLDPAKWG 126          
BLAST of EY679939 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.189e-28
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  238 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG 507
            N PL+ VD EI +++  EK RQ+KGLELI SENFTS +VM+A+GS  TNKY+EGYPG+RYYGG E +D  E+LCQKRAL+AFRLD  KWG
Sbjct:    7 NTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWG 96          
The following BLAST results are available for this feature:
BLAST of EY679939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU2.070e-6892.19Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR1.012e-6489.84Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_PEA2.444e-6386.72Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH5.419e-6389.06Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR2.901e-6186.72Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYC_CAEEL1.649e-3272.41Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEBR8.040e-3270.11Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_SCHPO1.834e-2967.74Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_ASHGO4.087e-2965.93Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI1.189e-2866.67Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-F09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679939 ID=EY679939; Name=EY679939; organism=Citrus sinensis; type=EST; length=984bp
GGGGACCGCAGTACGGTCCGGATTCCGGGTCGACCACGCGTCCGCAGAAA
ACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCTC
TTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAAT
GGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACGA
GAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTTG
AGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACGA
CAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTATC
CGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGAT
ATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGAA
TCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAAA
ATGGGGAGGTGCAAACTTGTCATTTGAAATTCTCGGAAAAATACTTGTTG
TTTTTCTAATGCTGCAGTAATTTTCTGAAAGTATGTCAGTACGAAAATTC
TATAGTGAATGTGCAGTCTCCTGTCTGGATTCCCATCTAATTTTTCAGTC
TACACCTGCATTTGTTAAAACCTCATGAAAGGATCATGGGCATTTGATCT
TCCTCCTGGTGGGGCATCTCTCCACACGGCTAATCAGACAAAAACCAAAA
AGAAAATCTGGCATGGTCCATTATTTTTGAAAAAAATGCAATAAAAATTG
AAATGAAAGCCATGTGCTTAAATAAAATATGAACCATGTGGAAAAAAAAA
TGCCCCCCCCTCTTTCAGGGCAAAATTTGTATGTGTGTTGGGGGCTTTTG
GTTTTAAGGACCCAAATTTATTAAATATAAAAACTGTATTCCCAAAGGGT
TTGACAACAAAAAAAAAAAATCATTAAAGTTGTG
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