EY679916

Overview
NameEY679916
Unique NameEY679916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679916_ssr82 microsatellite EY679916_ssr82:82..93. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679916 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.059e-34
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 3
Query:  423 VWALCLILVVHSSWLASANMEGDALHSLRSNLIDPNNVLQSWDPTLVNPCTW--VSC 587
            V  + L+L+ +S WLAS+NMEGDALHSLR+NL+DPNNVLQSWDPTLVNPCTW  V+C
Sbjct:   12 VCLISLLLLFNSLWLASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTC 68          

HSP 2 Score: 76.2554 bits (186), Expect = 1.059e-34
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  568 PAHGFHVTCNNDNSVIRS*FLKNAAFVWSTSFTAGLAQNLQYLELYSNNINWNKFQGTLGI*TTWVSLDLYLKNFPGPIPKNLGK 822
            P   FHVTCNN+NSVIR   L NA          G  +NLQYLELYSNNI        LG  T  VSLDLYL +F GPIP +LGK
Sbjct:   60 PCTWFHVTCNNENSVIRV-DLGNADLSGQLVPQLGQLKNLQYLELYSNNIT-GPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGK 142          
BLAST of EY679916 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.733e-34
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  438 LILVVHSSWLASANMEGDALHSLRSNLIDPNNVLQSWDPTLVNPCTW--VSC 587
            ++L  HS WLASAN+EGDALH+LR  L+DPNNVLQSWDPTLVNPCTW  V+C
Sbjct:   14 ILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTC 65          

HSP 2 Score: 78.9518 bits (193), Expect = 6.733e-34
Identity = 47/85 (55.29%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  568 PAHGFHVTCNNDNSVIRS*FLKNAAFVWSTSFTAGLAQNLQYLELYSNNINWNKFQGTLGI*TTWVSLDLYLKNFPGPIPKNLGK 822
            P   FHVTCNN+NSVIR   L NA          G+ +NLQYLELYSNNI        LG  T  VSLDLYL +F GPIP++LGK
Sbjct:   57 PCTWFHVTCNNENSVIRV-DLGNAELSGHLVPELGVLKNLQYLELYSNNIT-GPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGK 139          
BLAST of EY679916 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.836e-14
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  568 PAHGFHVTCNNDNSVIRS*FLKNAAFVWSTSFTAGLAQ--NLQYLELYSNNINWNKFQGTLGI*TTWVSLDLYLKNFPGPIPKNLGK 822
            P   FHVTCN +NSV R   L   +   S      LAQ  NLQYLEL++NNI   +    LG     VSLDL+  N  GPIP +LGK
Sbjct:   58 PCSWFHVTCNTENSVTR---LDLGSANLSGELVPQLAQLPNLQYLELFNNNIT-GEIPEELGDLMELVSLDLFANNISGPIPSSLGK 140          

HSP 2 Score: 38.5058 bits (88), Expect = 1.836e-14
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 3
Query:  438 LILVVHSSWLASANMEGDALHSLRSNLID---PNNVLQSWDPTLVNPCTW--VSC 587
            LIL +      +   + DAL +LRS+L      NN+LQSW+ T V PC+W  V+C
Sbjct:   12 LILFLDFVSRVTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTC 66          
BLAST of EY679916 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.196e-12
Identity = 46/88 (52.27%), Postives = 48/88 (54.55%), Query Frame = 1
Query:  559 LSIPAHGFHVTCNNDNSVIRS*FLKNAAFVWSTSFTAGLAQNLQYLELYSNNINWNKFQGTLGI*TTWVSLDLYLKNFPGPIPKNLGK 822
            L  P   FHVTCN+DNSV R   L NA          G   NLQYLELYSNNI        LG  T  VSLDLYL N  GPIP  LG+
Sbjct:   53 LVTPCTWFHVTCNSDNSVTRV-DLGNANLSGQLVMQLGQLPNLQYLELYSNNIT-GTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGR 138          
The following BLAST results are available for this feature:
BLAST of EY679916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SERK2_ARATH1.059e-3473.68Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK1_ARATH6.733e-3475.00Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK5_ARATH1.836e-1447.13Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
BAK1_ARATH3.196e-1252.27BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-D09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679916 ID=EY679916; Name=EY679916; organism=Citrus sinensis; type=EST; length=934bp
CAAAAAGAAATGTTTGACTTAAAATAATCCAAAAATGAAAAAAGGAAAAA
GGTTAAAAAGATAGATAACCAGATCCTTCTTTCTCTCTCTCTCACACACA
CTGGCTAGTGGCTACTTCTTAGAAAGTAAAAACCCAGGCAAAGTTTTATT
TGTTTTTGTTTTTGTTTCTGTTGTTGCCAGAGCCCAGAAGGTGGAAAAAT
AATTATAATAAAGGGAGTTGTTTTTGAGAATTTATTTTTATTTTATTTTT
TGGTGGGAGAGATCGAGATTTGAAGTGATGTGGTTTTAGGAGGTAATGGT
GAAGAGTCTGGTGGGAGTTTTGGAGCTAGGGTTATACTGATATGGTGTGT
TGTTGGGGTTTTGTTTATTGTTTGGATCTGAAGATTTTGACAGAGTAACA
AAAGCTCAAAATGAAGACTAAGGTTTGGGCTTTGTGTTTGATCTTGGTGG
TCCATTCATCATGGCTTGCTTCTGCTAACATGGAAGGTGATGCTTTGCAT
AGCTTGAGATCCAACTTAATTGATCCTAACAATGTACTGCAGAGTTGGGA
TCCTACCCTTGTCAATCCCTGCACATGGGTTTCATGTTACATGCAATAAT
GATAATAGTGTTATACGAAGTTGATTCTTGAAAAATGCGGCTTTTGTCTG
GTCAACTAGTTTCACAGCTGGGCTTGCCCAAAATTTGCAGTATTTGGAAC
TCTACAGCAATAACATTAACTGGAACAAATTCCAAGGGACCTTGGGAATT
TGAACAACTTGGGTGAGCTTGGATCTCTACTTGAAAAATTTCCCTGGGCC
TATCCCCAAAAACTTGGGGAAAAACTGTCAAATTGGGGGGTTCCCCCCGG
GTTAAAAAAAAACGTCTCCCCGGGAGCCCATTTCCCATTTCACTGGACAA
AAAATCCCCCCCCCCTTCAAGGAAGTGGATTTTA
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