EY679914

Overview
NameEY679914
Unique NameEY679914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679914_ssr700 microsatellite EY679914_ssr700:700..711. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679914 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.261e-28
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 1
Query:   10 KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPEL-----QAHGNRQQYQ---QQWHHFDGHHQPLLGGAE-ESHNFVTPENSLLSYDSSANSATLHTNQLKMEL 399
            +I GTALVLDEIINHVQSLQRQVE LSMRLAAVNPRIDFNLD++  +E+GSL+D SF    M + WP+      Q+  +RQ  Q   QQW  FDG +QP+ G  E ++H         +S +    SA LH NQ+KMEL
Sbjct:  289 RIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVNPRIDFNLDTILASENGSLMDGSFNAAPMQLAWPQQAIETEQSFHHRQLQQPPTQQW-PFDGLNQPVWGREEDQAHGNDNSNLMAVSENVMVASANLHPNQVKMEL 426          
BLAST of EY679914 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.050e-26
Identity = 73/132 (55.30%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   10 KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQ--QQWHHFDGHHQPLLGGAEESHNFVTPENSLLSYDSSANSATLHTNQLKMEL 399
            KI GTALVLDEIINHVQ+LQRQVE LSMRLAAVNPRIDFNLDS+  +E+GSL+D SF                N + Y   QQW  FDG+HQP  G  E+ H            + S  SATLH NQ+KMEL
Sbjct:  223 KIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRIDFNLDSILASENGSLMDGSF----------------NAESYHQLQQW-PFDGYHQPEWGREEDHH----------QANFSMGSATLHPNQVKMEL 327          
BLAST of EY679914 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.510e-12
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   10 KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAE-----SGSLIDSSFPGVVMPVMWPELQAHGNRQQ 240
            K++G A++LDEIIN+VQSLQRQVEFLSM+LA VNP++DFNL+ L   +     +GS   + FP   M + +P L  HG  QQ
Sbjct:  341 KVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFP-PNMSMAYPPL-PHGFMQQ 420          
BLAST of EY679914 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.303e-12
Identity = 49/118 (41.53%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   10 KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQQQWHHFDGHHQPLLGGAEESHNFVTPENSLLSYDSSANS 363
            K++G AL+LDEIIN+VQSLQRQVEFLSM+L++VN R+DFN+D+L       L    FP               N   + QQ    D   + LLG   + HN    +N  L+ D S+N+
Sbjct:  296 KVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDAL-------LSKDIFPS-------------SNNLMHHQQVLQLDSSAETLLG---DHHN----KNLQLNPDISSNN 386          
BLAST of EY679914 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.627e-11
Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   10 KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQQQWHHFDGHHQP------LLGGA---EESHNFVTPENSLLSYDSSANSATLH---TNQLKME 396
            K++G A++LDEIIN+VQSLQ Q+EFLSM+L+AVNP +DFNL+SL   ++      +FP   M +++P +        Y  Q     G  QP      LL G    +E+H + +  ++L+  +    +A  H   T  +K+E
Sbjct:  261 KVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSAPTFPH-NMSMLYPPV-------SYLSQ----TGFMQPNISSMSLLSGGLKRQETHGYESDHHNLVHMNHETGTAPDHEDTTADMKVE 389          
BLAST of EY679914 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.125e-11
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   10 KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVN-PRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQQQWHHFDGHHQPLLGGAEESHNFVTPENSL 336
            K++G AL+LDEIIN+VQSLQRQVEFLSM+L++VN  R+DFN+D+L         D   P     +    LQ+  +   +QQQ + ++ + Q L   +  +    +P NSL
Sbjct:  339 KVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSK------DVMIPSSNNRLHEEGLQSKSSSHHHQQQLNIYNNNSQLLPNISSNNMMLQSPMNSL 442          
BLAST of EY679914 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.775e-11
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   10 KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGS 162
            KI+G A +LDEIIN+VQSLQRQ+EFLSM+LA VNPR DF++D +F  E  S
Sbjct:  210 KITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEVAS 260          
The following BLAST results are available for this feature:
BLAST of EY679914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BH060_ARATH4.261e-2853.96Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BH048_ARATH1.050e-2655.30Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BH049_ARATH2.510e-1252.44Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH062_ARATH7.303e-1241.53Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH076_ARATH1.627e-1136.17Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH078_ARATH2.125e-1140.91Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH063_ARATH2.775e-1166.67Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-D07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679914 ID=EY679914; Name=EY679914; organism=Citrus sinensis; type=EST; length=949bp
GGATGATGAAAGATTTCTGGGACAGCATTAGTTTTAGATGAGATCATCAA
CCATGTGCAGTCGTTACAGCGTCAAGTGGAGTTCTTGTCAATGAGACTTG
CAGCAGTCAATCCAAGGATTGATTTCAATCTGGACAGCTTATTTGTTGCA
GAGAGTGGATCGTTAATCGACAGTAGCTTCCCTGGCGTGGTTATGCCTGT
AATGTGGCCTGAACTCCAAGCCCATGGAAACCGACAACAGTATCAACAGC
AATGGCATCATTTTGATGGGCATCACCAGCCTCTTTTGGGAGGAGCAGAA
GAAAGCCATAACTTTGTTACTCCCGAGAACTCACTTTTGAGTTATGATTC
TTCAGCAAATTCAGCAACTCTGCACACAAATCAATTGAAGATGGAGCTAT
GAAGATGCAATGAATCTCTCCAGCAGTAGCTAGTACCTCGTACTGTATAT
ATTGATGATAATATTAGCGGTTAGCAGAGTAGTAGAGGGCAGTCCTCAGC
ATTGATCCTGGGCTACCATTTGTCTTCAATTTACCCCGAGTCATTTGGAA
ACCCAGATTTGTTTCTACCGGAGACGATCACTTTCAGTGTGTCATTCTTA
TATAAATATAAATAATATTTTATTATAAGTATCTCTTACTTAATTAGAAA
TACTAATTTTCCCCTCAGAGTCATTCAATCTAATTCTTAATTTTCGAGAT
GATTGATTGATTCATACTGTAAAAACCTAGAAGTGGACTACCGTGCGTTC
TTATTTTTGCAAGTCTTCCTTTTCTCCCCCTAAAAATGATCTGGGGGCTT
TTACCGCCTTGGGAAAGAAACTGGTTGGAACCCCATTTTTGGAAATTTTT
GCTTAAATAAAAAATTTTTTTTTTTTTTATTTTCCCAAAAAAAAACAACA
AACAAAAACAAATAAAAAAAAAAAAGAAACAAAAAAAAACCAAAAAAAA
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