EY679913

Overview
NameEY679913
Unique NameEY679913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679913_ssr438 microsatellite EY679913_ssr438:438..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.368e-21
Identity = 52/166 (31.33%), Postives = 92/166 (55.42%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILVS 501
            CH+     G + CVLW   G   +++S+ E ++ LW L  S+  A + S    +  G L + + G W PH +   +A   +++++ WDLRSM +   IE+AH   VR++D++  K++ L +  D+  +  WD+R +  P++ L  H+HW W+V  N  +D  +L +
Sbjct:  127 CHLDNSAHGSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDVRHISEPVKCLEEHSHWVWSVRYNHSHDQLLLTA 291          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_RAT (Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.980e-21
Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 495
            CH+     G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  127 CHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLKFTSG-RWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_MOUSE (Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.788e-21
Identity = 52/164 (31.71%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 495
            CH+     G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + + G W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  127 CHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_PONAB (Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.512e-20
Identity = 54/164 (32.93%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 495
            CH+     G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L
Sbjct:  154 CHLDNTAHGNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTSG-RWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVL 316          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_HUMAN (Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.512e-20
Identity = 54/164 (32.93%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 495
            CH+     G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L
Sbjct:  127 CHLDNTAHGNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTSG-RWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVL 289          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.506e-20
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 495
            CH+     G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + SG  W PH +   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  127 CHLDNTAHGNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQLRFTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.506e-20
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 495
            CH+     G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + SG  W PH +   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L
Sbjct:  127 CHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLRFTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVL 289          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_MACFA (Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.672e-19
Identity = 52/164 (31.71%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 495
            CH+       + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + SG  W PH +   VA   +++++ WD R+M +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L
Sbjct:  127 CHLDNTAHSNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQLKFTSG-RWSPHHNCTQVATANDTTLRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVL 289          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_GECJA (Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.852e-19
Identity = 51/166 (30.72%), Postives = 88/166 (53.01%), Query Frame = 1
Query:   40 CHV-----GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILVS 501
            CH+     G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L + SG  W PH +   VA   +++++ WD+R+M +   IE AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L +
Sbjct:  127 CHLDNTAHGNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQLKFTSG-RWSPHHNCTQVATANDTAIRGWDIRTMSQIYCIESAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVSDPVKTLEEHSHWVWNVRYNHSHDQLVLTA 291          
BLAST of EY679913 vs. ExPASy Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.849e-18
Identity = 50/156 (32.05%), Postives = 88/156 (56.41%), Query Frame = 1
Query:   43 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILVS 501
            H G I  +L   SG ++ ++S+D+ NI LWS    ++N     KQ  G L  LS G+ +P+  N +A   + +++ WD R+  +T S++ AH   +R++D++  K + L++A D+  + +WD R  + P++   GH HW W+   N  +D  I+ S
Sbjct:  139 HTGIIKPILCDPSGSNNFIISLDDSNIRLWS-KIDDQNEPTVIKQF-GNLSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFSMDKAHSEQIRDIDFNPNKPYYLLSAGDDCKLKIWDTRQTRDPVKIFSGHNHWIWSAKFNRYHDQLIITS 292          
The following BLAST results are available for this feature:
BLAST of EY679913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TSSC1_DANRE1.368e-2131.33Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1[more]
TSSC1_RAT3.980e-2132.32Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 S... [more]
TSSC1_MOUSE6.788e-2131.71Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1[more]
TSSC1_PONAB1.512e-2032.93Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1[more]
TSSC1_HUMAN1.512e-2032.93Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2[more]
TSSC1_XENTR7.506e-2031.10Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 ... [more]
TSSC1_XENLA7.506e-2031.10Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_MACFA1.672e-1931.71Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2... [more]
TSSC1_GECJA2.852e-1930.72Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=... [more]
TSSC1_DICDI1.849e-1832.05Protein tssc1 homolog OS=Dictyostelium discoideum ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-D06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679913 ID=EY679913; Name=EY679913; organism=Citrus sinensis; type=EST; length=966bp
CCACGCGTCCGCTCAGTTGGAGCTTATCGCCGCTCTTGATGCCATGTTGG
TAAGATTAATTGCGTTCTTTGGTGGTCATCTGGAAGACATGATAAATTGG
TCAGCATAGACGAGGAAAATATTTTCTTGTGGAGCTTAGATTGTTCAAAC
AAGAATGCCCAGGTACAATCTAAACAGTCATCTGGTATGCTGCATTATTT
ATCTGGTGGAGCATGGGATCCGCATGATGTAAATGCTGTCGCAGCGACTT
GTGAATCATCAGTCCAGTTTTGGGATCTCAGATCAATGGGGAAGACAAAT
TCAATCGAGCATGCGCACGTCCGCAATGTGGACTATGACACCAAGAAAAA
GCATTTACTTGTTACTGCAGCAGATGAATCTGGGATACATTTATGGGATC
TTAGAATGCTGAAGGCACCTATCCAGGAACTCCCCGGACACACACACTGG
ACTTGGGCTGTCTGCTGTAACCCTGAGTATGATGGATTTATTTTGGTAAG
TCTTAATGGTCTCTCAAGTGGTAGATAGTTTTACTGATCTTGAATGCCAG
AAGAATCTCAGATCTACTTATTCATCCTATGTGGTTCCTCTTTTGGCACT
CTTTTGTAGCTATGGAAAGTGTTAGTTTCCAGTTTGAATACAGATTGCCC
ATTCATGGGCTGCATGAAAATATTCCTTACTTTTTAGGGACGGTGTATTC
CTTGTTGAAAGTAGTTAAATGACTGAAAAAAATTATTGGGTGGTTAAAAC
ATGAAAATTTTTAAACCCAAAGTAAAAATACGGCAAAAGCGCGGGGAACG
GAACCGACTGGTAAATTTTTGGGTTGGTTTCCCCCGCTCAAACCCTGGGA
GGAGACTTCCCCTCCCCAAAAACTTTATTTTGAAACCCCCAAATAACGGC
GGGTGTATTTTTTCTTTTTCCCCTATCTCTATAAATGGGGGTTTTATAAA
AAACAGGGGGGGGGTT
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