EY679910

Overview
NameEY679910
Unique NameEY679910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10724 contig Csv1_Contig10724:913..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY679910 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 2 
Query:   23 GLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 172
            GLRITYFWIKEQIEKEK +G D+S+YGSSKVVGTQAPVQLGSLRAADGKE
Sbjct:  328 GLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADGKE 377
[Close]
BLAST of EY679910 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.236e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 2 
Query:   23 GLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 172
            GLRITYFWIKEQ+EKEK +G+DLS YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  322 GLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRAADGKE 371
[Close]
BLAST of EY679910 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.236e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 2 
Query:   23 GLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 172
            GLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  329 GLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of EY679910 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.236e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 2 
Query:   23 GLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 172
            GLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  329 GLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
The following BLAST results are available for this feature:
BLAST of EY679910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME_ARATH7.244e-1990.00GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ1.236e-1888.00GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ1.236e-1888.00GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.236e-1888.00GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-D03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679910 ID=EY679910; Name=EY679910; organism=Citrus sinensis; type=EST; length=567bp
CCACGCGTCCGCCCACGCGTCCGGGCTGAGAATTACGTATTTCTGGATCA
AGGAACAGATTGAGAAGGAGAAGACTCAAGGTATTGACCTATCTGTTTAT
GGATCATCGAAGGTGGTAGGAACTCAAGCACCAGTTCAGTTAGGCTCACT
TCGTGCTGCTGATGGCAAAGAATGAAGTGGTTGAGCCATACATCTCTCGT
AGTTGCCCTCAGAAAAGCCATGTTTTATTATGCTATTTCTAGCAATCATA
ATTCCATGTTGTCTTTATGATATAAAGCTATCATTATGAGTTAAAAATTT
ACTTGTGTGGAGATTTAGGAACGCTTTGAGTTTGGACCATTCTTCAAATT
GGTTTCTAGTCTGTACTATGCTGAAGTGTCTGGGAGAAGCTTTTGCGCTC
ATTGTATTTTACCTAGCTTTTCAGTGGAGGCTGCTACAGTAGGATGATAT
AAGAGCATTTCCCTTTTGTGTATTATTTGTCGGTTTGAAATAAAAATAAT
TTCAATTTTATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAGGGCGGCCCGCCT
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