EY679908

Overview
NameEY679908
Unique NameEY679908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679908_ssr112 microsatellite EY679908_ssr112:112..131. BLAST: Citrus ESTs to Prunus persica proteins V1
EY679908_ssr111 microsatellite EY679908_ssr111:111..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679908 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.432e-47
Identity = 80/99 (80.81%), Postives = 90/99 (90.91%), Query Frame = 1
Query:  277 PLNKR-FSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAAL 570
            P+N    SS+  RTGQWVFSQ+IPTD+VV VGEANF LHKFMLVAKSNYIRKLI+ESK++D+TRINLS+IPGGPE+FEKAAKFCYGVNFEITV NVAAL
Sbjct:    8 PINMNSMSSSLARTGQWVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAAL 106          

HSP 2 Score: 48.521 bits (114), Expect = 2.432e-47
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 2
Query:  575 CAAEFLQMTDKYCENNLGWSH*KTSSSQVAFVKSPLGPLVGLKSGETLLP 724
            CAAEFLQMTDKYC+NNL     +   SQVA + S  G +V LKS E LLP
Sbjct:  108 CAAEFLQMTDKYCDNNLA-GRTQDFLSQVA-LSSLSGAIVVLKSCEILLP 155          
BLAST of EY679908 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.893e-21
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 1
Query:  298 SAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAAL 570
            S+++   +W+F +++P+DI + V   NF LHKF LV++S  IR+++ E +++D++++ L N+PGG E FE AAKFCYG+NFEIT  NVA L
Sbjct:   28 SSRQSCSEWIF-RDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISKVELLNLPGGAETFELAAKFCYGINFEITSSNVAQL 117          
BLAST of EY679908 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.649e-19
Identity = 38/87 (43.68%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  310 RTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAAL 570
            R   W  + +IP+D++V +G+ NF LHK+ L+++S  + +LI ES++ D T + L ++PGGPE FE A+KFCYGV  ++T  N++ L
Sbjct:   41 RGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGL 127          

HSP 2 Score: 27.7202 bits (60), Expect = 6.649e-19
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  551 STTLQLCRCAAEFLQMTDKYCENNL 625
            +T +   RCAAE+L+MT+   E NL
Sbjct:  121 ATNISGLRCAAEYLEMTEDLEEGNL 145          
BLAST of EY679908 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.167e-14
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  295 SSAKERTGQ-WVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIE-SKEAD-LTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAAL 570
            S A +R GQ W  +  +P+DIVV VGE +F LHKF L+++S  + + I E SKE D    I +S++PGG + FE  AKFCYGV  E+T  NV  L
Sbjct:   10 SDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYL 104          
BLAST of EY679908 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.495e-13
Identity = 31/96 (32.29%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  310 RTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEAD---------LTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAAL 570
            R   W  + +IP+D++V VG+ NF LHK+ ++++S  + + + ES  AD         +  + + ++PGG   FE AA+F YG+  ++T  N++ L
Sbjct:   39 RDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGL 134          

HSP 2 Score: 27.335 bits (59), Expect = 5.495e-13
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  572 RCAAEFLQMTDKYCENNL 625
            RCAAE+L+MT++  E NL
Sbjct:  135 RCAAEYLEMTEEMEEGNL 152          
The following BLAST results are available for this feature:
BLAST of EY679908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT2_ARATH2.432e-4780.81Root phototropism protein 2 OS=Arabidopsis thalian... [more]
Y5880_ARATH4.893e-2148.35BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT3_ARATH6.649e-1943.68Root phototropism protein 3 OS=Arabidopsis thalian... [more]
Y1044_ARATH1.167e-1448.42BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
NPH3_ORYSJ5.495e-1332.29Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-D01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679908 ID=EY679908; Name=EY679908; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGCTCTTTTGTCAGGAACTGAAAATGGGGTAGAATGGTCCA
ACCTCGTAAATGAAAAAAAGTATCTAAAAATATTTTAATTGTTAGATAAA
AAAAAAAAAAATATATATATATATATATATATTAATATTCCCTCATCATC
TTTTTTACATGTAGATGAAAAATCTCTCTATATAGCACAAGAGAGATATT
GGTAATCTTATACGGACTATGATCTCTTGATTCTCTCATCATATCAGATT
CCCCAAACCAGACAGCCATGGCTACCCCTCTAAACAAAAGGTTCTCTAGT
GCCAAAGAAAGAACTGGGCAATGGGTTTTTTCTCAGGAAATTCCAACTGA
TATCGTGGTTGCAGTTGGTGAAGCAAATTTCCCTCTTCATAAGTTCATGT
TAGTAGCAAAGAGCAATTACATAAGGAAACTGATAATTGAATCAAAAGAA
GCAGACTTGACAAGAATCAATCTATCTAACATTCCCGGAGGCCCTGAGAT
GTTCGAAAAGGCAGCGAAATTCTGTTATGGAGTGAACTTTGAAATCACAG
TCCACAACGTTGCAGCTCTGCCGTTGTGCAGCTGAGTTTCTCCAAATGAC
TGACAAGTATTGCGAGAACAACCTAGGCTGGTCGCACTGAAAAACTTCCT
CCTCTCAAGTCGCTTTTGTAAAGTCCCCTCTGGGGCCGTTGGTTGGTCTT
AAATCTGGGGAAACTCTTCTTCCCCCTCGAAAAAGGAACTCTTATTTTGT
TCAACGAAGCTTCAATTGTTGCAACGGGTAAGGGTTGGTTCAAAACAAAA
ATTTCCCTTGTGCCCACGCCACCCAAATGGGGGGGAGGGGAGGAAGTTTT
CCATTTTTTTGGATTTTGAATTTTTTTCAAAAAAAATCCTTTGGGGCGCC
CGAAAAAAAAAAAAAGGGAAAAAAAAAACCCC
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