EY679906

Overview
NameEY679906
Unique NameEY679906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679906 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:  238 MDAINVMKGYDKVDHHQHRAGIHSLRTHQRLKIAVTISAIVLLTLIIGLMLAVLIRESNTEE--------QQQLDAAKSIKTVCSVTQNPDSCFXXXXXXXXXXXXXXKPDPEVILKLSLQVNVNHFSNITSSIKS 621
            MD I   KGY KV+  + +A  +  +T +RL I + +S+IVL+ +II  +  V+I   N+E         Q +L  A S+K VC  T+ P SCF                DPE++ KLSL+V ++  S+  S +++
Sbjct:    1 MDTIKSFKGYGKVNELEQQA--YEKKTRKRL-IIIAVSSIVLIAVIIAAVAGVVIHNRNSESSPSSDSVPQTELSPAASLKAVCDTTRYPSSCF----SSISSLPESNTTDPELLFKLSLRVAIDELSSFPSKLRA 129
The following BLAST results are available for this feature:
BLAST of EY679906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PME3_PHAVU1.984e-1133.09Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-C11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679906 ID=EY679906; Name=EY679906; organism=Citrus sinensis; type=EST; length=904bp
CTTGATTCTCGAGTCTTGACCTCTTCAACTTCAGTTTAACCTCATCTCTT
CAGCTGCAGAAAACAAAAACCACGTCCATCCATGGAAATAGAATTGGAAA
ATAAAACCCAGGGAATTTCAACAGTATTTTTTAATTAAAAATTTTAATAT
TTGCTATTTATTGTACTTATTTCCTTCTAATCTACGCAAAAAAGAAAGAA
ATATCCACACGTCCAGAAGGACCAAACAAGCACGAAGATGGATGCTATCA
ATGTCATGAAAGGCTACGACAAAGTCGATCACCACCAACACCGCGCAGGA
ATTCATTCCCTTCGGACACATCAGCGTCTGAAAATCGCCGTCACCATCTC
AGCCATTGTTTTGTTGACCTTGATCATCGGTCTGATGCTTGCAGTTCTCA
TCCGGGAATCAAACACTGAAGAACAACAGCAACTGGACGCTGCCAAGTCG
ATCAAAACGGTGTGCAGCGTTACCCAGAACCCGGATTCATGCTTCACCGC
CTTATCTTCTTCTCTCAACATCTCATCGACAACGACAAAACCAGACCCAG
AAGTGATCTTGAAGCTCTCTCTGCAAGTCAACGTCAATCACTTCTCAAAC
ATCACTTCTTCGATTAAAAGTCTTTTACGGTAAACCCCTTGGAGGTTGCT
TTACCCAACTGCGTGGAATCAGCTGCCGGGACCCGTCAAGTCCAACTCAA
CCAATCCATGTCTGAATTGAAACCCCCCGTTTGACTGACAGGAATGGTCA
AAAACATCCCAAAATGGGATTCACCCCGGCCATGACGGAAAAAAAAAATT
TGCTTGGAAGGAATGGGAAGGAAAAAGGGGATCAAGGGGGGCGGGAAGAA
AATCCAAAAACATGAAGAAAAAAACTAAAAGGGGTTTTCCCCCTTTTACA
CCCC
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