EY679904

Overview
NameEY679904
Unique NameEY679904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679904 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 69/144 (47.92%), Postives = 95/144 (65.97%), Query Frame = 2
Query:    2 NLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALK-MNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWIDL 430
            NLAVRDV +SDPYV++ +G+Q +KTRVIK ++NP WNE L LSI +P  P+ + VYD D FS DD MG+AE DI+  + A K     S+     +   + S+ N L     ++ ++GKV QD+ LRL+NVE G LEIQL+ + L
Sbjct:  240 NLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383          
BLAST of EY679904 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.398e-28
Identity = 63/144 (43.75%), Postives = 97/144 (67.36%), Query Frame = 2
Query:    2 NLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTI-ISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWIDL 430
            NLA+RD+ SSDPYVV+ +GKQKL+T V+  ++NP WN++L LS+ +   P+ L VYD+D FS DD MG+A+ DI+  I +     D    G + I + + S  N L + S +   +GKV Q++ ++L+NVE GELE++++W+ L
Sbjct:  191 NLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWLPL 334          
BLAST of EY679904 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.330e-26
Identity = 61/144 (42.36%), Postives = 95/144 (65.97%), Query Frame = 2
Query:    2 NLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTI-ISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWIDL 430
            N+A+RD+ SSDPYVV+ +G+QK ++ V+K ++NP WNE+L LS+      + L V+D+D FS DD MG+AE DI+  I +     D    G + I + + S  N L E S +   +GKV Q++ ++L+NVE GELE++++W+ L
Sbjct:  192 NMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWLPL 335          
The following BLAST results are available for this feature:
BLAST of EY679904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD11_ARATH7.532e-3047.92Probable ADP-ribosylation factor GTPase-activating... [more]
AGD13_ARATH5.398e-2843.75Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH1.330e-2642.36ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-C09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679904 ID=EY679904; Name=EY679904; organism=Citrus sinensis; type=EST; length=933bp
TAATCTCGCCGTTCGCGACGTTCGTAGTAGCGATCCTTACGTTGTCGTTA
AGATGGGCAAACAGAAACTGAAGACTCGTGTTATTAAAAAGGATGTTAAT
CCGGAGTGGAACGAGGATTTAACTCTTTCAATTACAGATCCTAATGTTCC
AATCACGCTTACCGTCTATGACCATGATTTATTTAGCAAAGATGATAGAA
TGGGAGATGCTGAGTTTGATATTAAAACATATATAGAAGCTTTAAAGATG
AATTTGGATAGCCTCCCAACTGGCACCATAATCTCAAGAGTGATGCCGAG
CAGGCACAATTGCCTTTCCGAACAAAGCTGTGTAGTGTGGAAGGAAGGCA
AGGTTGTTCAAGATCTCGTTCTCAGATTGAGAAATGTAGAATGCGGTGAG
TTGGAGATTCAACTACAGTGGATTGACCTTCCTGGTTCCAAGGGTTTGTA
ATGTTTTATGAATGCTCCTATTTTTGCTTTTTCATGCATAGAAGACCGGT
ATCAGAATTTCCACCTGTGAGTTTCAAGTTGGCGTCAGTTTAGTCGTTGT
TATGTATTTAAAACTGACCTTGATTGCACCTGTAGTCACACATATGAATC
AGGTTTGTACTCATCAGTCATCATATAGGATCAAAATAATTTTTTGGTTC
ATTATACTATGAATGAAAAAATGAAGAATGAATTGTGTCNNANNNNAAAA
ANAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGGGGGGGGCCGCAATAGAAGGTCAAAAGTTAACAA
CGGCGGGGGGGGGGGGGTCAAGCCCCTCCCAATAGGGGGGGGGGGGCCCC
CTTTTAGAGGAGCCCGCTTTTTAAAGCCCGGGGGGGGGGGGGGAAAAACC
CCGTCATTACAAGGCGGGCTAAAAAATATAATT
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