EY679903

Overview
NameEY679903
Unique NameEY679903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679903 vs. ExPASy Swiss-Prot
Match: CPL1_ARATH (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.349e-55
Identity = 117/252 (46.43%), Postives = 153/252 (60.71%), Query Frame = 3 
Query:    3 RENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPITSDRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLXXXXXXXXDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTXXXXXXXXXXGSFKHLANVYMLRVKXXXXXXXXXXXRFSNANENCFMGQIISFGGSPLGQKES 755
            R+ APSE  FP R  +Q     V SR  WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N   SDR  HEN+R PKE+LRRD++LR N+ L D   F GE+           D+DF   R VS+TET + VL  IA+KCG KVE++P+LV+ST+L+FS+EAW + +KIGEGIG++           S ++LA+ YM R              F+  NEN  MG   +    P  + E+
Sbjct:  586 RDPAPSEPSFPQRPPVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSATETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNLADGYM-RANGDPGPSHRDATPFT--NENISMGNANALNNQPFARDET 834
The following BLAST results are available for this feature:
BLAST of EY679903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CPL1_ARATH2.349e-5546.43RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-C08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679903 ID=EY679903; Name=EY679903; organism=Citrus sinensis; type=EST; length=940bp
CAAGAGAAAATGCCCCAAGTGAAGCTCCATTTCCTGCAAGAACCCAGATG
CAAGTTTCAGTTCCACGTGTGCCATCACGTGGAAGCTGGTTTCCTGTGGA
AGAAGAGATGAGCCCACGGCAATTGAACAGAGCAGTACCAAAAGAATTTC
CTTTGAATTCTGAGGCTATGCAAATTGAGAAGCACCGGCCTCCTCATCCA
TCTTTTTTCCCTAAGATAGAGAATCCTATTACATCTGATAGGCCTCATGA
AAATCAAAGAATGCCAAAAGAGGCACTTCGTAGAGATGATCGGTTGAGGT
TAAACCATACACTGTCAGATTATCAATCTTTCTCAGGTGAGGAGATCCCC
TTGAGTAGATCATCTTCTAGCAGCAGGGATGTTGACTTTGAATCTGGAAG
GGATGTTTCAAGTACAGAAACTCCATCAGGAGTTTTACAGGATATAGCAA
TGAAGTGTGGAACAAAGGTGGAGTTCAGGCCCGCTTTGGTTGCTAGCACG
GAATTGCAGTTCTCAATTGAGGCTTGGTTTGCAGGAGAAAAAATCGGTGA
AGGAATTGGTAGAACAAGAAGGGAAGCCCAACGTCAAGCTGCAGAGGGAT
CCTTCAAGCACTTGGCTAATGTATATATGTTACGTGTTAAGTCTGACTCT
GGTTCTGGGCATGGAGATGGGAGCCGATTTTCAAATGCAAATGAAAATTG
CTTTATGGGGCAAATAATTTCATTTGGGGGGTCGCCCTTGGGCCAAAAAG
AATCCCTGGCCACCAAAACCTTCCAAACCTTGGTGATCCAAGAACGGGAA
CGCCTCAAAAAAATTAATGGGGTTCACGTATCCGGGCCTTTAAAAAAATT
AGGGCGGGAAGGAGGGGCCTTGGGGGGGAGGTGTTTTCCGCCCCCCCCCC
CCCCCTCTTTCCCCCAAAATTTCCGTCCCCCAAAAGGGAG
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