EY679891

Overview
NameEY679891
Unique NameEY679891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.249e-60
Identity = 112/158 (70.89%), Postives = 124/158 (78.48%), Query Frame = 2
Query:  125 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF 598
            MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKPPPEKRKCPP TGMAQFVS+FAEPGDP YAPP  + E P ++R RIH                 YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREF
Sbjct:    1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREF 158          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.130e-20
Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++REF V  GPI    ++ + R G  R +
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGY 146          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.130e-20
Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++REF V  GPI    ++ + R G  R +
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGY 146          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.130e-20
Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++REF V  GPI    ++ + R G  R +
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGY 146          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.631e-19
Identity = 60/146 (41.10%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHND N  GD +KTLFVAR++Y+TTESK++REF V  GPI    ++   R G  R +
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYNKRSGKPRGY 146          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.634e-19
Identity = 57/129 (44.19%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPI 619
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHND N  GD +KTLFVAR++Y+TTESK++REF V  GPI
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPI 129          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.879e-16
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPI 619
            L A LL LF PR PL Y PP    PEKR  P ++G+A+++  +A+  D  Y P     E+  E+R R+                  +DP +D +V GDPYKT+F++RLSY+T ES I+REF    GPI
Sbjct:    5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREF-TRYGPI 126          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13
Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF 598
            L  NL  +F PR P  + PPP     PP TG+  ++S F +P   +P     +E  E   E+R +                   +DP+++   +GDPYKT+FV+R+SY+TT+ K++ EF
Sbjct:    4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE---EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEF 119          
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.670e-13
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  248 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPI 619
            L  NLL LF  R P+ + PP    P ++K     G+A+F++ F +P D      VE  +  +ERR R                   +DP    N + DP++TLF+AR++Y+T+ESK++REF    GPI
Sbjct:    5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREF-EFYGPI 128          
The following BLAST results are available for this feature:
BLAST of EY679891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RU17_ARATH3.249e-6070.89U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi... [more]
RU17_MOUSE1.130e-2041.78U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m... [more]
RU17_HUMAN1.130e-2041.78U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
RU17_BOVIN1.130e-2041.78U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t... [more]
RU17_XENTR1.631e-1941.10U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_XENLA3.634e-1944.19U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_SCHPO2.879e-1641.41U1 small nuclear ribonucleoprotein 70 kDa homolog ... [more]
RU17_DICDI2.282e-1333.61U1 small nuclear ribonucleoprotein 70 kDa OS=Dicty... [more]
RU17_DROME8.670e-1335.16U1 small nuclear ribonucleoprotein 70 kDa OS=Droso... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-B07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679891 ID=EY679891; Name=EY679891; organism=Citrus sinensis; type=EST; length=952bp
TACCAAAACCCGATCCAAATTCAACAAATACCCAGCTTGATGCTATTATC
TTCTTAAGAACCCTGGTCACCAAACCCTAGCTTGTAACCAGAACCCTAGT
TGGCACCCGATCTCCTCTGTAAACATGGGAGACTACAACGATGCATTCAT
GCGTAACCAAAACGCCGCCGTTCAGGCCCGTACTAAGGCCCAGAACCGCG
CCAACGTCCTTCAGCTTAAGCTGATTGGGCAAAGCCATCCTACCGGTTTA
ACAGCCAATCTCTTGAAGCTCTTTGAGCCTCGAGCTCCGCTTGAGTATAA
ACCACCTCCAGAGAAAAGAAAATGCCCGCCACTGACAGGAATGGCGCAGT
TTGTTAGTCACTTTGCTGAACCTGGAGATCCTCTGTATGCTCCACCTGTA
GAGAAGGCTGAGACTCCTGTAGAAAGAAGGGCTAGAATCCACAAGTTACG
ACTAGAGAAGGGTGCAGAAAAGGCTGCTGAAGAACTTAAGAAATATGATC
CTCATAATGACCCAAATGTGTCAGGAGATCCATACAAGACACTGTTTGTT
GCTAGGCTGAGTTATGAGACAACTGAGAGTAAAATCAAAAGGGAGTTTTG
AGTCCTTATGGGGCCAATTAACGGGGAAGGTATTTTGAACACCCCCAGGT
GGGGTTTGGTAAGAAGTTGGGTGCCCACTTTTATCCTTTTGCATATCTTT
TCAAAAAGAATTTAAGCCTTAAAAATTAAGTTTTTCCCAAACTAAGGAAA
AAAAAGGTCTTTTATTTTTAAATTTTTCTCGGGTTTTTAAAAAAAAAAAC
TTATTTTTTTCTAAAAACTAAAAAAAGTTTTTAACCTGGTTAAATTTTGG
TTTGGGGTTCTGGGCCCCGGGTTTGGGTTTGGGGTGGGAAATCCCCTAAG
AAAAGGGGGTATAAAAAAACAAAAAAAAAAAAAATCTCTCTTTTTTTTTT
AA
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