EY679872

Overview
NameEY679872
Unique NameEY679872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679872_ssr490 microsatellite EY679872_ssr490:490..504. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679872 vs. ExPASy Swiss-Prot
Match: ABA2_NICPL (Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.806e-29
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   16 SIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVMGTPPNN--NSERKEAG 282
            S+VIP  QVS+MHARISYK GAF++ DL+SEHGT++TDNEGRRYR S NFP RF PSD IEFGSDKKA FRVKVM  PP      ER+  G
Sbjct:  571 SVVIPLPQVSEMHARISYKGGAFFVTDLRSEHGTWITDNEGRRYRASPNFPTRFHPSDIIEFGSDKKAAFRVKVMKFPPKTAAKEERQAVG 661          
BLAST of EY679872 vs. ExPASy Swiss-Prot
Match: ABA2_SOLLC (Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.637e-27
Identity = 65/94 (69.15%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   16 SIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVMGTPPNNNSERKEAGEILQA 297
            SIV+P  QVS+MHARIS KDGAF++ DL+SEHGT+VTDNEGRRYR S NFP RF PSD IEFGSD KA FRVK M   P   SERKE  E ++A
Sbjct:  577 SIVLPLPQVSEMHARISCKDGAFFVTDLRSEHGTWVTDNEGRRYRTSPNFPTRFHPSDVIEFGSD-KAAFRVKAMKF-PLKTSERKEEREAVEA 668          
BLAST of EY679872 vs. ExPASy Swiss-Prot
Match: ABA2_PRUAR (Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.916e-26
Identity = 67/99 (67.68%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    1 DFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVMGTPPNNNSERKEAGEILQA 297
            D S  SI IP  QVS+MHARISYKDGAFYL DL+SEHGT++ D EG+RYRV  NFPARFRPSD IE GS K A FRVKVM + P   S  KE   ILQA
Sbjct:  567 DVSGISIAIPKPQVSEMHARISYKDGAFYLTDLRSEHGTWIADIEGKRYRVPPNFPARFRPSDAIEIGSQKVA-FRVKVMKSSP--GSVEKEG--ILQA 660          
BLAST of EY679872 vs. ExPASy Swiss-Prot
Match: ABA2_CAPAN (Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   16 SIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVMGTPP 252
            S+VIP +QVS MHARISY  GAF     +S+HGT+  DNEGRRYRVS NFP RF  SD I FGSD KA FR+K M   P
Sbjct:  569 SVVIPLSQVSDMHARISYNGGAFLGTAFRSDHGTWFIDNEGRRYRVSPNFPMRFHSSDVIVFGSD-KAAFRIKAMKFAP 646          
The following BLAST results are available for this feature:
BLAST of EY679872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ABA2_NICPL4.806e-2969.23Zeaxanthin epoxidase, chloroplastic OS=Nicotiana p... [more]
ABA2_SOLLC2.637e-2769.15Zeaxanthin epoxidase, chloroplastic OS=Solanum lyc... [more]
ABA2_PRUAR2.916e-2667.68Zeaxanthin epoxidase, chloroplastic OS=Prunus arme... [more]
ABA2_CAPAN2.024e-1963.29Zeaxanthin epoxidase, chloroplastic OS=Capsicum an... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-H11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679872 ID=EY679872; Name=EY679872; organism=Citrus sinensis; type=EST; length=923bp
GATTTTTCTCGAACATCCATTGTGATCCCTTCAGCGCAGGTGTCCAAAAT
GCATGCTCGTATCAGCTATAAAGATGGTGCCTTCTACCTGATTGATTTGC
AGAGCGAACATGGAACCTATGTCACAGACAATGAAGGGCGAAGGTATAGG
GTATCTTCAAACTTTCCTGCTCGGTTTCGTCCGTCAGACACTATTGAGTT
TGGCTCTGATAAAAAGGCAATTTTTCGGGTGAAGGTGATGGGAACTCCTC
CAAATAATAATTCAGAGAGAAAGGAAGCGGGTGAAATTCTTCAGGCAGTG
TAAAATATCTGAAGTTAGTCATTTTTTTATCGGAGTATACAGGAAGAGGA
ATTGTACAGCATTTATTGGCGCACTAATGCAAGTCTGATGCCCTGCCTTG
TATACAAATGTAGGATCAGAGTAGCGAGCACAGCACAAGAAATGTCATAC
TCACACATAGAGCTGCTTTGTTTCAAGGAAAGCTGGAACATTTAATTTAA
TTTAATTTCATTTCTAATACAAACAACTAATTGGCTTAATGGGCCAAGAA
CACAAAAAACGAACACACAAAACAGCAACAATAGGGGGGGCCCGCCCGAA
AGATCCAACCTAACGTAACGCGTGGCTGCAACGACATAGTCTTTTATAGT
GGCCACCAAATTTCACTTCCTGGGCCGCCTTTTTAACCCTCCTGGCTGGG
AAAAACCCGGGCTATCCCCCCTTTATACCCCTTGAAACAAATCCCCCTTT
TCCCGCTTGGTGTAATAACCGAAAAGGCCCCCACCGATTCCCCCATCCCC
AACTTTCGCGGCACCCGGGAAAAGCCAAGGGGACAGCGCCCCGGAAGCGC
GACCATTACGCCCCGAGGGCGGGCGGGGGGGGGTTGCCACACGAAACGAG
AACGAAAGACGACATCTCAACTT
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