EY679871

Overview
NameEY679871
Unique NameEY679871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1050
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679871 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 8.173e-23
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    4 RVRLADKYLSEAALGEANEDAIHSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 195
            RV+LA+ YLS+AALG+AN DAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  409 RVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY679871 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 5.298e-22
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 1
Query:    4 RVRLADKYLSEAALGEANEDAIHSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 198
            RV+LA++YLSEAALG+AN DA+ +G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  400 RVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of EY679871 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.541e-21
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    4 RVRLADKYLSEAALGEANEDAIHSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 201
            RV+LAD+Y+S AALG+AN+DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  407 RVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY679871 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.541e-21
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    4 RVRLADKYLSEAALGEANEDAIHSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 198
            RV+LAD Y+S+AALG+AN+DA+ +G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  399 RVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of EY679871 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.485e-21
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    4 RVRLADKYLSEAALGEANEDAIHSGNFYG-KAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 195
            RV+LADKY+SEAALG+AN DAI  G FYG +AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  409 RVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
The following BLAST results are available for this feature:
BLAST of EY679871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RCA_ARATH8.173e-2376.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ5.298e-2274.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.541e-2169.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.541e-2170.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR4.485e-2177.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-H10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679871 ID=EY679871; Name=EY679871; organism=Citrus sinensis; type=EST; length=1050bp
CCACGCGTCCGGTTGGCTGACAAGTATCTGAGTGAGGCCGCTCTTGGTGA
AGCTAATGAAGATGCTATTCATAGTGGAAATTTCTATGGCAAAGCAGCCC
AGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACTGCAGAA
AACTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACACGCT
TTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCTTAGGATGT
GAGATATTCAAATAATATTGTTGCATTTTCATTTCTTTTTTAATCAGAAA
GAATCCTCTAATTTTGTGTTANAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAGGGGGGGGAGGGACAAAACGACAGCAAAAACAACAA
ACAACCGAGAAACGGGGGGGGGCCCCCCCAAAAAAAAACAACTTTGAAAG
GACGGGGGTGGTGAAAACATAATCACATTTATAGGGGACACACCTAAATA
TTGATTGGGGCGAGAGAAATTATTAAAAACGAGTAAGAAGGAGAAAAACA
GCGGCGCTCCCCAAAAATAAACCCCGCATTGAGCGCCCCCCCCCCCCTTT
CCCCCACCGGAGGAGAATAAACAAAGAAAGCCCCCCCCTCTACTCCCCCT
TCTCCCAAATTCTGACACACCACTAAGATGAGAAAAAAGGACGAGCCCCC
CTGCGCGCCCACAATATTTACAAAGCAGGGGTGGGGGTGTGTGCAAAACT
CCCACCTGCGCACAGGCCCCAGAATAATGGCACGGGACAAAAGATCAGCC
CGCCACCGTTTTATCCCTTTTTCTTTCCCTTTTTTTATGTTCACACAGCG
ATAAGCGGAGCGAAGTCGTCCGCGAGCAAGGGAGGAAAAATCAACGCCGG
GGGGTGGGCCACCATTAGAGGGGGTGTGAAGGATATAGGTGCGGTGCCCC
AAGAACCTGGACACGACACGACCCCGGCACCGGAACAAGAACATGCGCGG
back to top