EY679870

Overview
NameEY679870
Unique NameEY679870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.764e-59
Identity = 113/193 (58.55%), Postives = 146/193 (75.65%), Query Frame = 2
Query:   77 NIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKAL-KRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLARKNLHQVV*SSQ----SNEKSPNPPQLKLIWGN 640
            ++  +  P  Q +PG    E+  + E+TF RY S  L KR GKGVAIVWFRNDLRVLDNEALL+AW SSE +LPVYCVDPR   TT++FG PKTGALRAQF+IECL DL++NL+ RGL+LLI+HGKPE+I+PSLAK++ AH VYA KETCSEE+ VE++  +NL ++V  S     ++  S N  +L+L+WG+
Sbjct:   35 SLTARTTPTVQNVPGLTPEEMERVCEQTFQRYESGGLGKRKGKGVAIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGS 227          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.587e-57
Identity = 113/179 (63.13%), Postives = 139/179 (77.65%), Query Frame = 2
Query:  113 IPGADSREINHIVEETFGRYTSKALKRNGKG-VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ-TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLARKNLHQVV--*SSQSNEKSPNPPQLKLIWG 637
            +P   + E     +E F RYTS +++R+G G VAIVWFRNDLRVLDNEA+++AW +S+ VLPVYCVDPR S  +T++FGFPKTGALRAQFLIECL DL++NL  +GL+LLIRHGKPE+I+PS+AK+  AH VYA KETCSEEL VE L RK L QVV      SN+K P  P+L+LIWG
Sbjct:   53 VPSLSADEAGAAADEAFLRYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWG 231          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 5.395e-55
Identity = 109/187 (58.29%), Postives = 133/187 (71.12%), Query Frame = 2
Query:   89 KVIPHCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLARKNLHQVV*SSQSNEKSPNPPQLKLIWGN 640
            K+  H   +P     EI+ +  +TF RY   +S ++KR GKGV I+WFRNDLRVLDN+AL KAW SS+ +LPVYC+DPR   TT+ F FPKTGALR  FL+ECL DLRKNLM RGLNLLIR GKPEEI+PSLAK FGA  V+A KETCSEE++VERL  + L +V           N  +L+LIWG+
Sbjct:   43 KMNDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTKLELIWGS 219          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.385e-26
Identity = 66/124 (53.23%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  173 TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 544
            ++ AL+R     A+VWFRNDLRV DNE L  A D    VLPVYC DPR    +   GF KTG  RAQFLIE +++LRKNL  RG NL++R GKPE ++  LAK  GA AVYA +E   +E+  E
Sbjct:  109 SAAALRR----AAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSS-GFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAE 227          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.529e-22
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 2
Query:  206 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG-AHAVYAQKETCSEELNVERLARK 559
            V I   RNDLR+ DNE L  A  +++ ++P+YC DPRH   T++F FPKTG  R +FL+E + DLR  L  +G NLL+R GKPEE+I  L K  G   AV   +E   EE +VE   ++
Sbjct:    7 VIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQ 125          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.027e-21
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  212 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVE 544
            I   RNDLR+ DNE    A  ++E ++P+YC DPRH Q TYH+ FPKTG  R +FL++ + DLR  L   G  LL+R GKPE+++  L K  G+ +  A  +E  SEE +VE
Sbjct:    8 ICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVE 119          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.341e-21
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  212 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 547
            +VW+RNDLRV D+E L  A   +  V+ +YC DPR       FGF KTG  RA+FL+E +ADLR++L   G +LL+R G PEE+IP+L       AV+   E  SEEL VER
Sbjct:    7 LVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKA-PFGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVER 117          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.693e-21
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  209 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDP-RHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE 532
            A+VWFR+DLRV DN  L  A  ++E V+PVY  DP R++++ Y  G PKTG  RA F  + +ADLR +L +RG +LL+R G+P  ++P LA+  GA AVYAQ +  +EE
Sbjct:    4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEY--GPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEE 110          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.255e-19
Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  212 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLARKNL 565
            +VWFRNDLR+ D+E L +A  S   +  VYC DPR    T H GF KTG  R+ FL + + +L ++L   G  LL+  G PE++IP +AK   A  +Y  +E   EEL+VER   K L
Sbjct:    9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQT-HQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQL 125          
BLAST of EY679870 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.274e-18
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  209 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE 532
            A+VWFRNDLR +D+E  L+A  +++    V+C+DPR  +TT   GF +TG  RA+FLIE L DLR  L + G  L++R G+PE ++  L  S    AV+   E  +EE
Sbjct:    4 ALVWFRNDLRTIDHEPFLRA-STADRCFAVHCIDPRQFETT-ELGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEE 109          
The following BLAST results are available for this feature:
BLAST of EY679870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CRYD_SOLLC2.764e-5958.55Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_ORYSJ2.587e-5763.13Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_ARATH5.395e-5558.29Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
PHR2_ARATH1.385e-2653.23Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_XENLA3.529e-2246.22Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_DANRE1.027e-2146.43Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_GLOVI1.341e-2149.11Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_NATPD8.693e-2149.54Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]
CRYD_SYNY31.255e-1944.07Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_RHOBA5.274e-1844.44Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-H09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679870 ID=EY679870; Name=EY679870; organism=Citrus sinensis; type=EST; length=956bp
CTCAGCACAAATCGAGCCCCGTTTTCGGTTCAGAACAATGAACATTATTG
CTTCAAAAAATAGGAACCCAAATCAAAACATTCAACAGAAAGTAATCCCT
CACTGTCAGGTTATTCCTGGAGCAGACTCTAGGGAAATAAACCACATTGT
AGAAGAAACATTTGGAAGATACACATCCAAGGCATTGAAGAGGAACGGTA
AAGGAGTTGCCATTGTTTGGTTTAGAAATGATTTGAGAGTTTTGGATAAT
GAAGCTTTGCTCAAGGCCTGGGATTCTTCTGAAATGGTCTTGCCTGTTTA
CTGTGTTGATCCTCGCCATTCTCAGACAACTTACCATTTTGGTTTCCCTA
AAACTGGAGCACTCAGGGCACAGTTTCTCATAGAATGTTTGGCTGACCTA
AGAAAGAATTTGATGAATCGAGGCCTAAACCTGCTCATTCGACATGGGAA
GCCGGAGGAAATTATCCCTTCTCTTGCAAAATCGTTTGGAGCTCATGCAG
TATATGCCCAAAAGGAAACTTGCAGTGAGGAGCTGAATGTGGAAAGATTG
GCCAGAAAAAATCTGCACCAAGTTGTGTAATCATCTCAATCTAATGAAAA
ATCCCCAAACCCACCTCAGTTAAAATTGATTTGGGGGAACTACAATGTAT
CCATTTAAATGAATTTCCATTCAATCACGGTAGTCTTTCCCTGAAGTCCT
ACCTCCCTTTTCCCAAGGTCCATTGAAACCAAAATGCAACAATCCAGGGC
TGGATTTAAAAATTCCCTTCATCTTTTTGGAACCCCCCCCCTAAGGGGTG
TTCGATTGGGAGGTTCCGTTTCTTTTTGATTCAAGGCCGGCTTGAAATTT
CCTTTTCCACGAGAGGGTTTTAATAAGGGGAAACGGTGTTTCAGGGGGGG
GGGGGGAAAAGGGGGAACCCCCGTGGGTGAACAGTGAAAGTGGACTAATT
TTCTGG
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