EY679869

Overview
NameEY679869
Unique NameEY679869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9394 contig Csv1_Contig9394:1547..2147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY679869 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 3 
Query:    6 EQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQIL---RAASLDVD----KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 275
            EQP +A  AP++LV+QV S+    ++ +AGENALPRYD  A+ Q+L   R   ++++     +M   TYLR++  L Q DN+  F  FVKKM+   D
Sbjct:  353 EQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLD 449
The following BLAST results are available for this feature:
BLAST of EY679869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AMYB_IPOBA4.375e-1242.27Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-H07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679869 ID=EY679869; Name=EY679869; organism=Citrus sinensis; type=EST; length=602bp
ATCATGAACAACCACAAGATGCCCTTTGTGCACCTGAGAAGCTAGTCAAG
CAAGTGGCTTCAGCAACTCAGACAGCACACGTTCCTCTGGCCGGGGAAAA
TGCGTTGCCACGTTATGATGAATACGCTCACGAGCAGATCTTGCGAGCAG
CATCACTTGATGTAGACAAACAGATGTGTGCATTCACGTACTTGAGGATG
AACCCACATTTATTCCAACCCGATAATTGGAGACAGTTTGTAGCATTTGT
GAAGAAGATGAATGAAGGGAAGGATGTTCACCGGTGTTGGGAGCAAGTGG
AGCGCGAAGCTGAGCACTTCGTCCATGTCACCCAGCCATTGGTGCAAGAG
GCTGCCGTGGCCCTTATGCACTAAAAGGCTATGTTTTGTTTTGTTACGAC
ATGCCTTGTTGCAAGTTTTCTTTCAAGTTAGAAAAAAATGACTAGGTCCC
TCATTTTGCTATGGCCCTTTTTATTATGGCTGTAGCTATTTAAAATGTTA
AGGTCACTTATATACATATGTATTGTTTCTATAAACCCGTTAAACCGATG
TAATGGAATAAAACCAATTTATTCACCTAAAAAAAAAAAAAAAAAGGGGC
GC
back to top