EY679866

Overview
NameEY679866
Unique NameEY679866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679866_ssr521 microsatellite EY679866_ssr521:521..544. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.124e-36
Identity = 83/146 (56.85%), Postives = 97/146 (66.44%), Query Frame = 2
Query:   77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            MASSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMK                                        VWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEF+L+
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMK----------------------------------------VWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELE 106          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.170e-35
Identity = 78/143 (54.55%), Postives = 89/143 (62.24%), Query Frame = 2
Query:   86 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            ++ISS  V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM                                        QVWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEF+L+
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELE 104          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.170e-35
Identity = 84/146 (57.53%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            MA SMISS TVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEF+L+
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELE 106          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.795e-34
Identity = 81/146 (55.48%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            MASSMISS T+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM                                        QVWPP G KKFETLSYLP L+   L KE+ YLLRS WIPCLEF+L+
Sbjct:    1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELE 106          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.345e-34
Identity = 80/146 (54.79%), Postives = 90/146 (61.64%), Query Frame = 2
Query:   77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            MASSM+S+  VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM                                        QVWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEF+L+
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCM----------------------------------------QVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELE 106          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.999e-34
Identity = 78/146 (53.42%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            MASSM+S+ TVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMK                                        VWP  G+KKFETLSYLPPL+ E L  E+ YLLRSGWIPCLEF+L+
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMK----------------------------------------VWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELE 106          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.164e-33
Identity = 84/148 (56.76%), Postives = 93/148 (62.84%), Query Frame = 2
Query:   77 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K +NDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEF+L+
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELE 107          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.386e-33
Identity = 84/148 (56.76%), Postives = 93/148 (62.84%), Query Frame = 2
Query:   77 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K +NDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEF+L+
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELE 107          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.386e-33
Identity = 79/144 (54.86%), Postives = 90/144 (62.50%), Query Frame = 2
Query:   77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFK 508
            MASSM+SS  VAT NR   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM                                        QVWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEF+
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFE 102          
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.680e-32
Identity = 74/141 (52.48%), Postives = 86/141 (60.99%), Query Frame = 2
Query:   92 ISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMK                                        VWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEF+L+
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK----------------------------------------VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELE 104          
The following BLAST results are available for this feature:
BLAST of EY679866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RBS_FAGCR1.124e-3656.85Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA6.170e-3554.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE6.170e-3557.53Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI1.795e-3455.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR2.345e-3454.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES3.999e-3453.42Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.164e-3356.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP3.386e-3356.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_MESCR3.386e-3354.86Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_LACSA1.680e-3252.48Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-H04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679866 ID=EY679866; Name=EY679866; organism=Citrus sinensis; type=EST; length=954bp
ACCGCAGTACGGTCGGGATTCCCGGGTCGACCACGCGTCCGCCCACGCGT
CCGGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCG
ACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGT
CGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGA
AGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAA
TGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTTTGC
TTCTTTAAATTGACGGCTTTCTTCTTTTACCTCTCAATTATGTTTTTAAT
TAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGCTTG
AAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTT
GCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGG
AATTCAAGTTGAAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATAAATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
AAAAAATTACACATGTCATGAATCAATTGGCCAGAAATAACCATTCAATA
TCAAAACCCTGCATTAACAATTGGCTTATTTAAAAATCAAACCTTTTGGG
TTAACCGAAATTTTAACAGCAAAAGGGGGGGGGAAATTTGAATTTTTTTT
TTTTTGTTATTCCTTTTGGGGAGGCGGGACCGCAGAAAAAGAAAGATGTA
ACCCGAAGCCACCCGCACCAACACAAAAATTAACAAAGGAGACACACGGA
AAAGGTGTGGAAACCCGCCCAAGGAATAGGACAGAAAAAAAGGGACCCCC
TGTTTGTGAAAAAAAGGGTGGGGGAGATGCCAAAACGGTGAAACCCCCAT
TTTT
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