EY679866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 1.124e-36 Identity = 83/146 (56.85%), Postives = 97/146 (66.44%), Query Frame = 2 Query: 77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 MASSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMK VWPP GL+KFETLSYLPPLS E+L K+I YL+ GWIPCLEF+L+ Sbjct: 1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMK----------------------------------------VWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELE 106
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 6.170e-35 Identity = 78/143 (54.55%), Postives = 89/143 (62.24%), Query Frame = 2 Query: 86 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 ++ISS V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM QVWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEF+L+ Sbjct: 2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELE 104
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 6.170e-35 Identity = 84/146 (57.53%), Postives = 91/146 (62.33%), Query Frame = 2 Query: 77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 MA SMISS TVA +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS E L KE+ YLLR IPCLEF+L+ Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELE 106
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 1.795e-34 Identity = 81/146 (55.48%), Postives = 91/146 (62.33%), Query Frame = 2 Query: 77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 MASSMISS T+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM QVWPP G KKFETLSYLP L+ L KE+ YLLRS WIPCLEF+L+ Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELE 106
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 2.345e-34 Identity = 80/146 (54.79%), Postives = 90/146 (61.64%), Query Frame = 2 Query: 77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 MASSM+S+ VA NRAS AQASMVAPFTGLKS+SAFP T+KT DITSIASNGGRVQCM QVWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEF+L+ Sbjct: 1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCM----------------------------------------QVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELE 106
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.999e-34 Identity = 78/146 (53.42%), Postives = 91/146 (62.33%), Query Frame = 2 Query: 77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 MASSM+S+ TVA+ NR S AQA+MVAPFTGLKS+ FP T+KTN+DITSI SNGG+VQCMK VWP G+KKFETLSYLPPL+ E L E+ YLLRSGWIPCLEF+L+ Sbjct: 1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMK----------------------------------------VWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELE 106
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.164e-33 Identity = 84/148 (56.76%), Postives = 93/148 (62.84%), Query Frame = 2 Query: 77 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 MASSMISS TVAT A+R + AQA MVAPF GLKSSSAFP T+K +NDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR W+PCLEF+L+ Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELE 107
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.386e-33 Identity = 84/148 (56.76%), Postives = 93/148 (62.84%), Query Frame = 2 Query: 77 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 MASSMISS TVAT A+R + AQA MVAPFTGLKSSSA P T+K +NDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS E+L KE+ YLLR W+PCLEF+L+ Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELE 107
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 3.386e-33 Identity = 79/144 (54.86%), Postives = 90/144 (62.50%), Query Frame = 2 Query: 77 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFK 508 MASSM+SS VAT NR AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM QVWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEF+ Sbjct: 1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFE 102
BLAST of EY679866 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.680e-32 Identity = 74/141 (52.48%), Postives = 86/141 (60.99%), Query Frame = 2 Query: 92 ISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFASLN*RLSSFTSQLCF*LIFL*ACMLQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFKLK 514 ISS+ +AT NR + QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMK VWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEF+L+ Sbjct: 4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK----------------------------------------VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELE 104 The following BLAST results are available for this feature:
BLAST of EY679866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY679866 ID=EY679866; Name=EY679866; organism=Citrus sinensis; type=EST; length=954bpback to top |