EY679852

Overview
NameEY679852
Unique NameEY679852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 9.341e-96
Identity = 176/208 (84.62%), Postives = 188/208 (90.38%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633
            DISDDQQDITRGKGMVDTLFQAPM SGTHYAVMSS+DYISQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT        +PT+  L     ++  PRVP+IV
Sbjct:   77 DISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEENPRVPIIV 282          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 9.341e-96
Identity = 176/208 (84.62%), Postives = 188/208 (90.38%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633
            DISDDQQDITRGKGMVDTLFQAPM SGTHYAVMSS+DYISQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT        +PT+  L     ++  PRVP+IV
Sbjct:   77 DISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEENPRVPIIV 282          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 1.858e-94
Identity = 158/177 (89.27%), Postives = 171/177 (96.61%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNAT 543
            D SDDQQDITRGKGMVD++FQAPM +GTH+AV+SS++Y+SQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT
Sbjct:   77 DTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 253          

HSP 2 Score: 36.965 bits (84), Expect = 1.858e-94
Identity = 22/52 (42.31%), Postives = 30/52 (57.69%), Query Frame = 3
Query:  567 PPNVQLPGMYNQKENSP----CSPHSQLGMNSPHWRLLSPVQGRREKYYRAP 710
            P NVQLPGMYN++EN+     C+ +    + +P  R      GR EK+Y AP
Sbjct:  261 PTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIR-----DGRMEKFYWAP 307          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.706e-89
Identity = 165/210 (78.57%), Postives = 183/210 (87.14%), Query Frame = 1
Query:    7 VRDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633
            V+D SDDQQDITRGKGMVD+LFQAP  +GTH+AV+ S++Y+SQGLRQY+LDN LDG YIAPAFMDK+VVHITKNFL LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT        +PT+  L     ++   RVP+IV
Sbjct:   79 VQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKQENARVPIIV 286          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 4.964e-89
Identity = 166/208 (79.81%), Postives = 179/208 (86.06%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLVCTTRKR-IPRVPLIV 633
            DISDDQQDITRGKG VD+LFQAP   GTH AV+SS++Y+SQGLR Y  DNT+ G YIAPAFMDK+VVHI+KNF+ LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT        +PT+  L     K   PRVP+IV
Sbjct:   68 DISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEDNPRVPIIV 273          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 8.468e-89
Identity = 163/208 (78.37%), Postives = 181/208 (87.02%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLVCTTRKR-IPRVPLIV 633
            DISDDQQDITRGKG+VD+LFQAP   GTH AV+SS++Y+SQGLR+Y  DNT+ G YIAPAFMDK+VVH++KNF+ LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT         PT+  L     KR  PRVP++V
Sbjct:   67 DISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DAPTNVQLPGMYNKRENPRVPIVV 272          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.886e-88
Identity = 161/210 (76.67%), Postives = 183/210 (87.14%), Query Frame = 1
Query:    7 VRDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633
            V+D SDDQQDI RGKGMVD+LFQAP  +GTH+AV+ S++Y+SQGLRQY++DNTLDG YIAP+FMDK+VVHITKNFL LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT        +PT+  L     ++   RVP+IV
Sbjct:   79 VQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKQENARVPIIV 286          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.464e-88
Identity = 164/208 (78.85%), Postives = 181/208 (87.02%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633
            DISDDQQDITRGKG+VD+LFQAPM  GTH A++SS++YISQGLR+Y  DNT+DGLYIAPAFMDK++VH+ KNF+ LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT         PT+  L     ++  PRVP+IV
Sbjct:   65 DISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DAPTNVQLPGMYNKEENPRVPIIV 269          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.218e-88
Identity = 162/208 (77.88%), Postives = 180/208 (86.54%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLVCTTRKR-IPRVPLIV 633
            D+SDDQQDITRGKG+VD+LFQAPMD+GTHYAV+SSH Y+S GLRQY+ DN  DG YIAPAF+DK+VVHI KNF+ LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ+VNAT        +PT+  L     K    RVP+IV
Sbjct:   81 DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEDNARVPIIV 286          
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.218e-88
Identity = 163/208 (78.37%), Postives = 178/208 (85.58%), Query Frame = 1
Query:   13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633
            D SDDQQDITRGKG+ D LFQAPM +GTH AV+SS++YIS GLR YS DN +DG YIAPAFMDK+ VHI KNFL LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GGTTQYTVNNQ+VNAT        +PT+  L     ++  PRVP+IV
Sbjct:   74 DTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEENPRVPIIV 279          
The following BLAST results are available for this feature:
BLAST of EY679852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA2_LARTR9.341e-9684.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR9.341e-9684.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.858e-9489.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.706e-8978.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ4.964e-8979.81Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU8.468e-8978.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.886e-8876.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.464e-8878.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.218e-8877.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA3.218e-8878.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-G01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679852 ID=EY679852; Name=EY679852; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGCGACATATCAGATGACCAACAGGACATTACTAGAGGAAA
GGGAATGGTGGACACACTCTTCCAAGCTCCCATGGACAGCGGAACTCACT
ATGCGGTCATGAGCTCCCATGATTACATCAGCCAAGGTCTTCGCCAGTAC
AGCTTGGACAACACTCTGGATGGTTTATATATTGCCCCTGCATTTATGGA
TAAGGTCGTTGTTCACATCACCAAGAATTTCTTGAATCTCCCAAACATTA
AGGTTCCTCTCATATTGGGTATTTGGGGAGGCAAAGGTCAAGGAAAGTCA
TTCCAGTGTGAGCTCGTCTTTGCCAAGATGGGAATCAACCCCATTATGAT
GAGCGCTGGTGAATTGGAAAGTGGAAATGCTGGAGAGCCTGCAAAATTAA
TTAGGCAAAGGTATCGTGAGGCAGCAGACATCATCAAAAAGGGAAAGATG
TGCTGCCTTTTCATCAATGATCTTGATGCAGGAGCTGGTAGGATGGGTGG
GACTACCCAATACACAGTCAACAATCAGCTGGTGAATGCCACCCCTCCTG
AACATTGCTGACAACCCCACCCAACGTCCAGCTCCCTGGTATGTACAACC
AGAAAGAGAATTCCCCGTGTTCCCCTCATAGTCAACTGGGAATGAACTCC
CCACATTGGAGGCTCCTCTCCCCAGTGCAGGGCCGAAGGGAAAAATATTA
CCGGGCCCCCTACTCGGGGAAAAAGGGATTGGAGTCGGGTCCTGAAGTCT
ATCGAGAAAGACATGGGTCCCGGGGAGGAAATTGAGAAAACAGGGTAACC
ATTTGCCCCAAGACACACAATGGAACTTCTTGGGAGGCCTTGGTGGGAAT
AAATGTAACCAATTAATGGTA
back to top