EY679852
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 9.341e-96 Identity = 176/208 (84.62%), Postives = 188/208 (90.38%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633 DISDDQQDITRGKGMVDTLFQAPM SGTHYAVMSS+DYISQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT +PT+ L ++ PRVP+IV Sbjct: 77 DISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEENPRVPIIV 282
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 9.341e-96 Identity = 176/208 (84.62%), Postives = 188/208 (90.38%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633 DISDDQQDITRGKGMVDTLFQAPM SGTHYAVMSS+DYISQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT +PT+ L ++ PRVP+IV Sbjct: 77 DISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEENPRVPIIV 282
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2) HSP 1 Score: 331.643 bits (849), Expect = 1.858e-94 Identity = 158/177 (89.27%), Postives = 171/177 (96.61%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNAT 543 D SDDQQDITRGKGMVD++FQAPM +GTH+AV+SS++Y+SQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT Sbjct: 77 DTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 253 HSP 2 Score: 36.965 bits (84), Expect = 1.858e-94 Identity = 22/52 (42.31%), Postives = 30/52 (57.69%), Query Frame = 3 Query: 567 PPNVQLPGMYNQKENSP----CSPHSQLGMNSPHWRLLSPVQGRREKYYRAP 710 P NVQLPGMYN++EN+ C+ + + +P R GR EK+Y AP Sbjct: 261 PTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIR-----DGRMEKFYWAP 307
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 1.706e-89 Identity = 165/210 (78.57%), Postives = 183/210 (87.14%), Query Frame = 1 Query: 7 VRDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633 V+D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ S++Y+SQGLRQY+LDN LDG YIAPAFMDK+VVHITKNFL LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT +PT+ L ++ RVP+IV Sbjct: 79 VQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKQENARVPIIV 286
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2) HSP 1 Score: 327.791 bits (839), Expect = 4.964e-89 Identity = 166/208 (79.81%), Postives = 179/208 (86.06%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLVCTTRKR-IPRVPLIV 633 DISDDQQDITRGKG VD+LFQAP GTH AV+SS++Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+KNF+ LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT +PT+ L K PRVP+IV Sbjct: 68 DISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEDNPRVPIIV 273
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 327.02 bits (837), Expect = 8.468e-89 Identity = 163/208 (78.37%), Postives = 181/208 (87.02%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLVCTTRKR-IPRVPLIV 633 DISDDQQDITRGKG+VD+LFQAP GTH AV+SS++Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KNF+ LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT PT+ L KR PRVP++V Sbjct: 67 DISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DAPTNVQLPGMYNKRENPRVPIVV 272
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1) HSP 1 Score: 325.865 bits (834), Expect = 1.886e-88 Identity = 161/210 (76.67%), Postives = 183/210 (87.14%), Query Frame = 1 Query: 7 VRDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633 V+D SDDQQDI RGKGMVD+LFQAP +GTH+AV+ S++Y+SQGLRQY++DNTLDG YIAP+FMDK+VVHITKNFL LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT +PT+ L ++ RVP+IV Sbjct: 79 VQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKQENARVPIIV 286
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 2.464e-88 Identity = 164/208 (78.85%), Postives = 181/208 (87.02%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633 DISDDQQDITRGKG+VD+LFQAPM GTH A++SS++YISQGLR+Y DNT+DGLYIAPAFMDK++VH+ KNF+ LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ+VNAT PT+ L ++ PRVP+IV Sbjct: 65 DISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA--DAPTNVQLPGMYNKEENPRVPIIV 269
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 3.218e-88 Identity = 162/208 (77.88%), Postives = 180/208 (86.54%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLVCTTRKR-IPRVPLIV 633 D+SDDQQDITRGKG+VD+LFQAPMD+GTHYAV+SSH Y+S GLRQY+ DN DG YIAPAF+DK+VVHI KNF+ LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ+VNAT +PT+ L K RVP+IV Sbjct: 81 DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEDNARVPIIV 286
BLAST of EY679852 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 3.218e-88 Identity = 163/208 (78.37%), Postives = 178/208 (85.58%), Query Frame = 1 Query: 13 DISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQLVNATPPEHC*QPHPTSSSLV-CTTRKRIPRVPLIV 633 D SDDQQDITRGKG+ D LFQAPM +GTH AV+SS++YIS GLR YS DN +DG YIAPAFMDK+ VHI KNFL LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GGTTQYTVNNQ+VNAT +PT+ L ++ PRVP+IV Sbjct: 74 DTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIA--DNPTNVQLPGMYNKEENPRVPIIV 279 The following BLAST results are available for this feature:
BLAST of EY679852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >EY679852 ID=EY679852; Name=EY679852; organism=Citrus sinensis; type=EST; length=871bpback to top |