EY679836

Overview
NameEY679836
Unique NameEY679836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: ARP_ARATH (Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 7.772e-59
Identity = 82/121 (67.77%), Postives = 93/121 (76.86%), Query Frame = 3
Query:  318 SYRITEWDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGVVGYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDSYFLP 680
            SYRI EWD +LS++            TGDLNCAH+EIDI+NPAGN+RSAGFT EERQSFG N L KGFVDTF+ QHPGVVGYTYWGYRHGG +K  KG  L+YFLVS+S+A   HDSY LP
Sbjct:  401 SYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGG-RKTNKGWRLDYFLVSQSIAANVHDSYILP 520          

HSP 2 Score: 77.7962 bits (190), Expect = 7.772e-59
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   79 LIG*IKPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            +I  IKPLSV YG G+S HD+EGR+VTAEFDSF+L++ Y PNSGDGL+RL
Sbjct:  351 IISRIKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRL 400          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEA_DICDI (DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium discoideum GN=apeA PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.371e-31
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  321 YRITEWDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGVVG-YTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDSYF 674
            YRI EWD    +Y             GDLN AH EID+ NP  N++SAGFT EER SF +NFL KG+VD+++  +PG  G YT+W Y  GG  K + G  L+YF+VS+ L +    S F
Sbjct:  225 YRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSF-SNFLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNV-GWRLDYFVVSKRLMDSIKISPF 341          

HSP 2 Score: 57.7658 bits (138), Expect = 2.371e-31
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 1
Query:   94 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGD-GLRRL 228
            KP ++T+G+GI+ HD+EGR++T E+D F++++ Y PN+G  GL+RL
Sbjct:  178 KPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRL 223          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: EXOA_BACSU (Exodeoxyribonuclease OS=Bacillus subtilis GN=exoA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.269e-31
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  321 YRITEWDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGVVG-YTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            YR+ +W+ +L SY             GDLN AHQEID+ NP  NR +AGF+D+ER++F T FL  GFVD+F+  +P + G Y++W YR G   + I G  ++YF+VSESL E+  D+
Sbjct:  119 YRM-QWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAF-TRFLEAGFVDSFRHVYPDLEGAYSWWSYRAGARDRNI-GWRIDYFVVSESLKEQIEDA 232          

HSP 2 Score: 56.9954 bits (136), Expect = 5.269e-31
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   94 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            +PL V YG+G+ +HD EGR++T EF++ F+++ Y PNS  GL R+
Sbjct:   73 EPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLERI 117          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEX1_PANTR (DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes GN=APEX1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.435e-26
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  336 WDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGV-VGYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            WD +   +             GDLN AH+EID+ NP GN+++AGFT +ERQ FG    +    D+F+  +P     YT+W Y      K + G  L+YFL+S SL     DS
Sbjct:  188 WDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNV-GWRLDYFLLSHSLLPALCDS 298          

HSP 2 Score: 60.8474 bits (146), Expect = 4.435e-26
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   97 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            PL V+YG+G  +HD EGR++ AEFDSF L++ Y PN+G GL RL
Sbjct:  139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRL 182          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEX1_PANPA (DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.435e-26
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  336 WDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGV-VGYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            WD +   +             GDLN AH+EID+ NP GN+++AGFT +ERQ FG    +    D+F+  +P     YT+W Y      K + G  L+YFL+S SL     DS
Sbjct:  188 WDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNV-GWRLDYFLLSHSLLPALCDS 298          

HSP 2 Score: 60.8474 bits (146), Expect = 4.435e-26
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   97 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            PL V+YG+G  +HD EGR++ AEFDSF L++ Y PN+G GL RL
Sbjct:  139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRL 182          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEX1_HUMAN (DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.435e-26
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  336 WDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGV-VGYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            WD +   +             GDLN AH+EID+ NP GN+++AGFT +ERQ FG    +    D+F+  +P     YT+W Y      K + G  L+YFL+S SL     DS
Sbjct:  188 WDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNV-GWRLDYFLLSHSLLPALCDS 298          

HSP 2 Score: 60.8474 bits (146), Expect = 4.435e-26
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   97 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            PL V+YG+G  +HD EGR++ AEFDSF L++ Y PN+G GL RL
Sbjct:  139 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRL 182          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEX1_PONPY (DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus GN=APEX1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.773e-26
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  336 WDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGV-VGYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            WD +   +             GDLN AH+EID+ NP GN+++AGFT +ERQ FG    +    D+F+  +P     YT+W Y      K + G  L+YFL+S SL     DS
Sbjct:  188 WDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNV-GWRLDYFLLSHSLLTALCDS 298          

HSP 2 Score: 60.8474 bits (146), Expect = 5.773e-26
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   97 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            PL V+YG+G  +HD EGR++ AEFDSF L++ Y PN+G GL RL
Sbjct:  139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRL 182          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEX1_GORGO (DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla gorilla GN=APEX1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.773e-26
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  336 WDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGV-VGYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            WD +   +             GDLN AH+EID+ NP GN+++AGFT +ERQ FG    +    D+F+  +P     YT+W Y      K + G  L+YFL+S SL     DS
Sbjct:  188 WDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNV-GWRLDYFLLSHSLLPALCDS 298          

HSP 2 Score: 60.8474 bits (146), Expect = 5.773e-26
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   97 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            PL V+YG+G  +HD EGR++ AEFDSF L++ Y PN+G GL RL
Sbjct:  139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRL 182          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEX1_RAT (DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus GN=Apex1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.774e-26
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  336 WDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGVV-GYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            WD +   +             GDLN AH+EID+ NP GN+++AGFT +ERQ FG    +    D+F+  +P     YT+W Y      K + G  L+YFL+S SL     DS
Sbjct:  187 WDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNV-GWRLDYFLLSHSLLPALCDS 297          

HSP 2 Score: 59.6918 bits (143), Expect = 5.774e-26
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   97 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            PL V+YG+G  +HD EGR++ AEF+SF L++ Y PN+G GL RL
Sbjct:  138 PLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRL 181          
BLAST of EY679836 vs. ExPASy Swiss-Prot
Match: APEX1_MOUSE (DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.782e-26
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  336 WDPSLSSYXXXXXXXXXXXXTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTNFLSKGFVDTFQAQHPGVV-GYTYWGYRHGGAQKPIKGGGLNYFLVSESLAEKFHDS 668
            WD +   +             GDLN AH+EID+ NP GN+++AGFT +ERQ FG    +    D+F+  +P     YT+W Y      K + G  L+YFL+S SL     DS
Sbjct:  187 WDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNV-GWRLDYFLLSHSLLPALCDS 297          

HSP 2 Score: 59.3066 bits (142), Expect = 9.782e-26
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   97 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYFPNSGDGLRRL 228
            PL V+YG+G  +HD EGR++ AEF+SF L++ Y PN+G GL RL
Sbjct:  138 PLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRL 181          
The following BLAST results are available for this feature:
BLAST of EY679836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ARP_ARATH7.772e-5967.77Apurinic endonuclease-redox protein OS=Arabidopsis... [more]
APEA_DICDI2.371e-3146.22DNA-(apurinic or apyrimidinic site) lyase OS=Dicty... [more]
EXOA_BACSU5.269e-3145.30Exodeoxyribonuclease OS=Bacillus subtilis GN=exoA ... [more]
APEX1_PANTR4.435e-2637.50DNA-(apurinic or apyrimidinic site) lyase OS=Pan t... [more]
APEX1_PANPA4.435e-2637.50DNA-(apurinic or apyrimidinic site) lyase OS=Pan p... [more]
APEX1_HUMAN4.435e-2637.50DNA-(apurinic or apyrimidinic site) lyase OS=Homo ... [more]
APEX1_PONPY5.773e-2637.50DNA-(apurinic or apyrimidinic site) lyase OS=Pongo... [more]
APEX1_GORGO5.773e-2637.50DNA-(apurinic or apyrimidinic site) lyase OS=Goril... [more]
APEX1_RAT5.774e-2637.50DNA-(apurinic or apyrimidinic site) lyase OS=Rattu... [more]
APEX1_MOUSE9.782e-2637.50DNA-(apurinic or apyrimidinic site) lyase OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-E08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679836 ID=EY679836; Name=EY679836; organism=Citrus sinensis; type=EST; length=878bp
TTGATTTTTGCATTGCAACTATTTCTTTTACTTCAGTGATGATTTTGCTA
AATGGTATGCGTTCTAAAGTTTTTAACACTTATTGGGTAGATAAAACCAC
TCTCAGTCACATATGGCCTAGGCATATCAGATCACGACAGTGAGGGACGG
CTGGTGACAGCAGAGTTTGATTCATTTTTTCTGTTAAGCTGTTATTTTCC
AAACTCTGGAGATGGCTTGAGAAGACTGGTGATGAGCTCAAGCATCTTGT
ATTATGTTGCTAATCTATTTTATTCTTCGAAGAGTTTTTTGACTGATGTC
TATGCTTTCAATTCTAGTCATACAGAATTACAGAATGGGATCCATCTCTT
AGCAGCTATGTGAAAGAGCTGGAAAAGAAGAAGCCTGTCGTTTTGACTGG
TGATCTTAATTGTGCTCATCAGGAGATAGACATTTATAACCCTGCTGGAA
ATAGAAGAAGTGCTGGCTTCACAGATGAAGAAAGACAATCTTTTGGCACA
AACTTCTTATCTAAAGGTTTTGTAGATACCTTTCAAGCACAACATCCTGG
TGTTGTAGGCTATACTTATTGGGGTTATAGGCATGGTGGGGCGCAAAAAC
CCATAAAGGGTGGCGGCTTGAACTACTTCCTAGTATCAGAATCTCTAGCT
GAAAAGTTCCATGATTCATACTTTCTTCCTGGAAGTTACCGGGAACGATC
AATCCCCAATTTGGCCTTATTCCACAGCTCCAATTCCTTCTGCCGGGGTA
TATAAATGGCTTCACCCCCAATCCCCCACCCAATAATTGATTTTATTTTG
GTCGGGAACAAAATTTTTAGAAGAAGGTGGAAAACCGGTTAAGGAATTCC
GCCGAAAATTTTTTCTTTTTGGATGGCC
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