EY679828

Overview
NameEY679828
Unique NameEY679828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679828_ssr266 microsatellite EY679828_ssr266:266..277. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9569 contig Csv1_Contig9569:1184..1642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EY679828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_WHEAT9.491e-3094.20Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN9.491e-3094.20Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU9.491e-3094.20Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC9.491e-3094.20Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR9.491e-3094.20Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA9.491e-3094.20Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ9.491e-3094.20Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY9.491e-3094.20Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE9.491e-3094.20Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO9.491e-3094.20Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679828 ID=EY679828; Name=EY679828; organism=Citrus sinensis; type=EST; length=464bp
CCACGCGTCCGGTGGTATGCAGATTTCCCCCCTTGNAACTCACTGGGAAA
ACCATCACATTGGAGGTTCCCATTAAAGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTCCATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAACATC
CAGAAGGAGTCCACTCTGCATCTTGTGCTCCGTCTCCGTGGAGGTTTCTG
AGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGGTTTGTCTTG
GTTAATGTTTGCTTGCTATTGGTGAAATGGCTTACATAACTATTTGAAGT
TTATTTTGGTTGTGGTAGTTGAACTCTGTTTCTAAGATATTGATATGGTC
CCACTAAGGTGGGGGGGGGATATCCAAGAATCTTTTTCTTGACTAGAACG
AAAAGAACGGGGCC
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