EY679819 | Citrus Genome Database

Overview


Name	EY679819
Unique Name	EY679819
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1010

Libraries


Library Name	Type
Sweet orange leaf, young greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.169e-87
Identity = 147/184 (79.89%), Postives = 170/184 (92.39%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +PIR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFSSFGNI+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A KTKF NV+VKNLAESTTD+DLK  FGEYG ITSAVVM+DG+GKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG
Sbjct:  105 KPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVG 288

HSP 2 Score: 33.113 bits (74), Expect = 1.169e-87
Identity = 35/110 (31.82%), Postives = 49/110 (44.55%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQIS---QGLNLYIKNFGXXXXXXXXXXGVIFLNFGTITFMPXXXXXXXXXXXXLSNFGAFFTPGGSLPRALAKKEGEKGNV*PRPLYV 888
            KKSERE +L+ ++EQ    N K+ +   Q  NLY+KN              IF  FGT+T                S F AF TP      A+++  G+   +  +PLYV
Sbjct:  292 KKSERETELRVRYEQ----NLKEAADKFQSSNLYVKNLDPSISDEKLKE--IFSPFGTVTSSKVMRDPNGTSKG--SGFVAFATP-EEATEAMSQLSGKM--IESKPLYV 390

HSP 3 Score: 140.969 bits (354), Expect = 1.079e-32
Identity = 75/186 (40.32%), Postives = 109/186 (58.60%), Query Frame = 3

Query:   33 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            RD +  K+   N+++KNL +S     L + F  +G I S  +  DG G+SKGFGFV FEN + A  A++ LNG   +DK+ +VG   +K ERET             A K + +N++VKNL  S +DE LK+ F  +GT+TS+ VMRD +G SK  GFV F   ++A +A+  L+GK  + +  YV
Sbjct:  205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390

HSP 4 Score: 74.3294 bits (181), Expect = 1.240e-12
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 3

Query:   51 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 344
            K  + N+++KNLD SI  + L + FS FG + S K+  D +G SKG GFV F   E A  A+ +L+G +I  K ++V    RK++R  V ++ +F+ V
Sbjct:  314 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR-VRLQAQFSQV 410

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BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 3.348e-66
Identity = 120/186 (64.52%), Postives = 145/186 (77.96%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            RPIRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QE  R+      +F NV+VKNL +   +++L+K FG++G I+SAVVMRD  G S+CFGFVNFE  + AA AVE +NG    D   YVG
Sbjct:  117 RPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVG 302

HSP 2 Score: 38.1206 bits (87), Expect = 3.348e-66
Identity = 43/153 (28.10%), Postives = 67/153 (43.79%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTITFMPXXXXXXXXXXXXLSNFGAFFTPGGSLPRALAKKEGEKGNV*PRPLYVCPLPSPEKQKKKRGH--------RPSGLLSFLKRG*THHTVVGPPP 1002
            KKSERE++L+ +FEQ +  N  + SQG NLY+KN              +F  +G +T                  F A+  P  +L RAL++  G+   +  +PLY+      ++++ +R H        R  G +S       HH   GP P
Sbjct:  306 KKSEREEELRRKFEQ-ERINRFEKSQGANLYLKNLDDSVDDEKLKE--MFSEYGNVTSSKVMLNPQGMSRGF--GFVAYSNPEEAL-RALSEMNGKM--IGRKPLYIA---LAQRKEDRRAHLQALFSQIRAPGPMSGF-----HHPPGGPMP 442

HSP 3 Score: 129.028 bits (323), Expect = 4.242e-29
Identity = 72/194 (37.11%), Postives = 107/194 (55.15%), Query Frame = 3

Query:   12 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            IR     RD +       N+++KNL K I    L  TF  FG I S  +  D SG S+ FGFV FE  E+A +A++K+NG+ + D  ++VG   +K ERE   ++ KF              N+++KNL +S  DE LK+ F EYG +TS+ VM +  G S+ FGFV + N ++A +A+  +NGK    +  Y+
Sbjct:  212 IRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE-ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404

HSP 4 Score: 77.7962 bits (190), Expect = 1.121e-13
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 3

Query:   51 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 308
            KS   N+++KNLD S+D + L + FS +GN+ S K+  +  G S+GFGFV + N E A  A+ ++NG +I  K +++    RK++R
Sbjct:  328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 6.763e-64
Identity = 119/187 (63.64%), Postives = 148/187 (79.14%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            RPIRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG ILSCK+A D  G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R   E+ A+ + F NV+VKNL +  TD++LKK FG+YG I+SAVVM+D  G S+ FGFVNF + + AA AVE +NG    +   YVG
Sbjct:  113 RPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVG 298

HSP 2 Score: 34.6538 bits (78), Expect = 6.763e-64
Identity = 33/125 (26.40%), Postives = 57/125 (45.60%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTITFMPXXXXXXXXXXXXLSNFGAFFTPGGSLPRALAKKEGEKGNV*PRPLYVCPLPSPEKQKKKRGHRPS 942
            KKS+RE++L+ +FEQ +    +++ QG NLY+KN              +F  +G +T                  F A+  P  +L   LA KE     +  +PLYV      +++++++ H  S
Sbjct:  302 KKSDREEELRRKFEQERISRFEKL-QGSNLYLKNLDDSVNDEKLKE--MFSEYGNVTSCKVMMNSQGLSRGF--GFVAYSNPEEAL---LAMKEMNGKMIGRKPLYVA---LAQRKEERQAHLQS 415

HSP 3 Score: 124.405 bits (311), Expect = 1.045e-27
Identity = 65/176 (36.93%), Postives = 102/176 (57.95%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF-------------NNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N+++KNL K I    L  TF  +G+I S  +  D SG S+ FGFV F + E+A  A++K+NG+ + +  ++VG   +K +RE   ++ KF             +N+++KNL +S  DE LK+ F EYG +TS  VM +  G S+ FGFV + N ++A  A++ +NGK    +  YV
Sbjct:  226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE-ELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 400

HSP 4 Score: 78.1814 bits (191), Expect = 8.586e-14
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 311
            N+++KNLD S++ + L + FS +GN+ SCK+  +  G S+GFGFV + N E A  A+ ++NG +I  K ++V    RK+ER+
Sbjct:  329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 410

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 6.159e-62
Identity = 110/186 (59.14%), Postives = 142/186 (76.34%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            RP+RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  +   DE LK+ FG+YG   S  VM D +GKSK FGFV+FE  +DA KAV+ +NGK  + +  +VG
Sbjct:   80 RPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVG 264

HSP 2 Score: 36.1946 bits (82), Expect = 6.159e-62
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KK ER+ +LK +FEQ ++    +  QG+NLY+KN               FL FGTIT
Sbjct:  268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE--FLPFGTIT 321

HSP 3 Score: 135.191 bits (339), Expect = 5.919e-31
Identity = 76/176 (43.18%), Postives = 107/176 (60.80%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N++IKN    ++ + L + F  +G  LS K+ TD +G+SKGFGFV FE  E AQ A+D++NG  +N K +FVG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV
Sbjct:  192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

HSP 4 Score: 87.0409 bits (214), Expect = 1.041e-16
Identity = 52/175 (29.71%), Postives = 96/175 (54.86%), Query Frame = 3

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +PS       ++++ +L + +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  + V +       +R+    K+   N+F+KNL +S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+ +VG
Sbjct:    2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171

HSP 5 Score: 21.1718 bits (43), Expect = 1.041e-16
Identity = 10/29 (34.48%), Postives = 17/29 (58.62%), Query Frame = 1

Query:  598 GQFEQAQEGNCK---QISQGLNLYIKNFG 675
            G+F+  +E   +   +  +  N+YIKNFG
Sbjct:  171 GRFKSRKEREAELGARAKEFTNVYIKNFG 199

HSP 6 Score: 72.0182 bits (175), Expect = 6.154e-12
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 311
            N+++KNLD  ID + L   F  FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.777e-61
Identity = 108/187 (57.75%), Postives = 145/187 (77.54%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            RP RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+AQNAI  +NGML+NDK+VFVGH + K++R++    +K  F NV+VKN+ + TT+E+ +  F ++G ITSA + RD + GKS+ FGFVNF + D+AA AVEALN K F  ++ YVG
Sbjct:  124 RPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVG 310

HSP 2 Score: 36.1946 bits (82), Expect = 1.777e-61
Identity = 22/57 (38.60%), Postives = 32/57 (56.14%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KK ERE++L+ Q+E A+     +  QG+NLYIKN              +F ++GTIT
Sbjct:  314 KKHEREEELRKQYEAARIEKASKY-QGVNLYIKNLSDDIDDEKLRE--LFSSYGTIT 367

HSP 3 Score: 103.99 bits (258), Expect = 1.461e-21
Identity = 72/234 (30.77%), Postives = 106/234 (45.30%), Query Frame = 3

Query:   51 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV------------AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRD-------------------------------GD----------------------GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            K+   N+++KN+D+    +   D F  FG I S  +A D  SG+S+GFGFV F + ++A  A++ LN      ++++VG   +K ERE              A K +  N+++KNL++   DE L++ F  YGTITSA VMRD                               GD                      GKSK FGFV F + D+A+KAV  +N +    +  YV
Sbjct:  232 KANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYV 465

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.140e-60
Identity = 109/186 (58.60%), Postives = 143/186 (76.88%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P+RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK+ FG++G   S  VM D  GKSK FGFV+FE  +DA KAV+ +NGK+ + ++ YVG
Sbjct:   80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 2 Score: 33.8834 bits (76), Expect = 1.140e-60
Identity = 22/57 (38.60%), Postives = 30/57 (52.63%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KK ER+ +LK +FEQ ++    +  QG+NLY+KN               F  FGTIT
Sbjct:  268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE--FSPFGTIT 321

HSP 3 Score: 143.665 bits (361), Expect = 1.664e-33
Identity = 79/176 (44.89%), Postives = 109/176 (61.93%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N++IKN  + +D + L + F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

HSP 4 Score: 88.5817 bits (218), Expect = 3.644e-17
Identity = 54/175 (30.86%), Postives = 95/175 (54.29%), Query Frame = 3

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +PS       ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNL +S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+E +NG   +DR+ +VG
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171

HSP 5 Score: 21.1718 bits (43), Expect = 3.644e-17
Identity = 10/29 (34.48%), Postives = 17/29 (58.62%), Query Frame = 1

Query:  598 GQFEQAQEGNCK---QISQGLNLYIKNFG 675
            G+F+  +E   +   +  +  N+YIKNFG
Sbjct:  171 GRFKSRKEREAELGARAKEFTNVYIKNFG 199

HSP 6 Score: 74.3294 bits (181), Expect = 1.240e-12
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 311
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.487e-60
Identity = 109/186 (58.60%), Postives = 143/186 (76.88%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P+RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK+ FG++G   S  VM D  GKSK FGFV+FE  +DA KAV+ +NGK+ + ++ YVG
Sbjct:   80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 2 Score: 33.8834 bits (76), Expect = 1.487e-60
Identity = 22/57 (38.60%), Postives = 30/57 (52.63%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KK ER+ +LK +FEQ ++    +  QG+NLY+KN               F  FGTIT
Sbjct:  268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE--FSPFGTIT 321

HSP 3 Score: 143.665 bits (361), Expect = 1.664e-33
Identity = 79/176 (44.89%), Postives = 109/176 (61.93%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N++IKN  + +D + L + F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

HSP 4 Score: 88.5817 bits (218), Expect = 3.644e-17
Identity = 54/175 (30.86%), Postives = 95/175 (54.29%), Query Frame = 3

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +PS       ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNL +S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+E +NG   +DR+ +VG
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171

HSP 5 Score: 21.1718 bits (43), Expect = 3.644e-17
Identity = 10/29 (34.48%), Postives = 17/29 (58.62%), Query Frame = 1

Query:  598 GQFEQAQEGNCK---QISQGLNLYIKNFG 675
            G+F+  +E   +   +  +  N+YIKNFG
Sbjct:  171 GRFKSQKEREAELGARAKEFTNVYIKNFG 199

HSP 6 Score: 74.3294 bits (181), Expect = 1.240e-12
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 311
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.938e-60
Identity = 109/186 (58.60%), Postives = 142/186 (76.34%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P+RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK  FG++G   S  VM D  GKSK FGFV+FE  +DA KAV+ +NGK+ + ++ YVG
Sbjct:   80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 2 Score: 33.8834 bits (76), Expect = 1.938e-60
Identity = 22/57 (38.60%), Postives = 30/57 (52.63%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KK ER+ +LK +FEQ ++    +  QG+NLY+KN               F  FGTIT
Sbjct:  268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE--FSPFGTIT 321

HSP 3 Score: 145.206 bits (365), Expect = 5.720e-34
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

HSP 4 Score: 87.0409 bits (214), Expect = 1.040e-16
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 3

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +PS       ++++ +L        L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNL +S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+E +NG   +DR+ +VG
Sbjct:    2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171

HSP 5 Score: 21.1718 bits (43), Expect = 1.040e-16
Identity = 10/29 (34.48%), Postives = 17/29 (58.62%), Query Frame = 1

Query:  598 GQFEQAQEGNCK---QISQGLNLYIKNFG 675
            G+F+  +E   +   +  +  N+YIKNFG
Sbjct:  171 GRFKSRKEREAELGARAKEFTNVYIKNFG 199

HSP 6 Score: 74.3294 bits (181), Expect = 1.240e-12
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 311
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 1.938e-60
Identity = 109/186 (58.60%), Postives = 142/186 (76.34%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P+RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK  FG++G   S  VM D  GKSK FGFV+FE  +DA KAV+ +NGK+ + ++ YVG
Sbjct:   80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 2 Score: 33.8834 bits (76), Expect = 1.938e-60
Identity = 22/57 (38.60%), Postives = 30/57 (52.63%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KK ER+ +LK +FEQ ++    +  QG+NLY+KN               F  FGTIT
Sbjct:  268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE--FSPFGTIT 321

HSP 3 Score: 145.206 bits (365), Expect = 5.720e-34
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

HSP 4 Score: 88.5817 bits (218), Expect = 3.644e-17
Identity = 54/175 (30.86%), Postives = 95/175 (54.29%), Query Frame = 3

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +PS       ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNL +S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+E +NG   +DR+ +VG
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171

HSP 5 Score: 21.1718 bits (43), Expect = 3.644e-17
Identity = 10/29 (34.48%), Postives = 17/29 (58.62%), Query Frame = 1

Query:  598 GQFEQAQEGNCK---QISQGLNLYIKNFG 675
            G+F+  +E   +   +  +  N+YIKNFG
Sbjct:  171 GRFKSRKEREAELGARAKEFTNVYIKNFG 199

HSP 6 Score: 74.3294 bits (181), Expect = 1.240e-12
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 311
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.938e-60
Identity = 109/186 (58.60%), Postives = 142/186 (76.34%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P+RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK  FG++G   S  VM D  GKSK FGFV+FE  +DA KAV+ +NGK+ + ++ YVG
Sbjct:   80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 2 Score: 33.8834 bits (76), Expect = 1.938e-60
Identity = 22/57 (38.60%), Postives = 30/57 (52.63%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KK ER+ +LK +FEQ ++    +  QG+NLY+KN               F  FGTIT
Sbjct:  268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE--FSPFGTIT 321

HSP 3 Score: 145.206 bits (365), Expect = 5.720e-34
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

HSP 4 Score: 88.5817 bits (218), Expect = 3.644e-17
Identity = 54/175 (30.86%), Postives = 95/175 (54.29%), Query Frame = 3

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +PS       ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNL +S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+E +NG   +DR+ +VG
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171

HSP 5 Score: 21.1718 bits (43), Expect = 3.644e-17
Identity = 10/29 (34.48%), Postives = 17/29 (58.62%), Query Frame = 1

Query:  598 GQFEQAQEGNCK---QISQGLNLYIKNFG 675
            G+F+  +E   +   +  +  N+YIKNFG
Sbjct:  171 GRFKSRKEREAELGARAKEFTNVYIKNFG 199

HSP 6 Score: 74.3294 bits (181), Expect = 1.240e-12
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 311
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

The following BLAST results are available for this feature:

BLAST of EY679819 vs. ExPASy Swiss-Prot

BLAST of EY679819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
PABP2_ARATH	1.169e-87	79.89	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP3_ARATH	3.348e-66	64.52	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP5_ARATH	6.763e-64	63.64	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABPA_XENLA	6.159e-62	59.14	Polyadenylate-binding protein 1-A OS=Xenopus laevi...	[more]
PABP_COCIM	1.777e-61	57.75	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP1_RAT	1.140e-60	58.60	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_MOUSE	1.487e-60	58.60	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP1_PONAB	1.938e-60	58.60	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP1_HUMAN	1.938e-60	58.60	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	1.938e-60	58.60	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-650-004-D03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679819 ID=EY679819; Name=EY679819; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGATTAGAATCATGTATTCCCATCGGGATCCTAGTATTCGG
AAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGA
TCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTT
GTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTG
CAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGG
CATGCTTATTAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGC
AGGAAAGAGAAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTC
AAAAACCTTGCTGAGTCAACTACAGATGAAGATTTGAAGAAATTTTTTGG
TGAGTATGGAACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAA
AATCCAAGTGTTTTGGATTTGTGAATTTTGAAAATGCAGATGATGCTGCC
AAAGCTGTTGAAGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGGTA
TGTTGGAAAAGCTCATAAAAAAATCTGAAAGAGAACAAAAGCTTAAAGGG
CAATTTGAGCAAGCCCAGGAAGGAAACTGTAAACAAATTTCCCAGGGTTT
GAATTTGTATATCAAGAATTTTGGGTGAAAGTAATTGATGAAGAAAAAAT
TAAAGGGAGTTATTTTCCTGAATTTTGGCACAATTACCTTCATGCCAGGG
GTAGGCGGGATCCCTGGTGGAAATTAATAAGGGCTCTCGAATTTTGGGGC
GTTTTTCACCCCTGGAGGAAGCCTCCCCCGAGCCCTTGCAAAAAAAGAAG
GGGAAAAAGGCAATGTGTGACCACGACCCCTTTATGTTTGCCCGTTGCCC
TCCCCCGAGAAACAAAAAAAAAAAAGGGGGCACAGGCCTAGCGGGCTACT
TAGTTTTCTCAAAAGGGGATGAACCCATCACACAGTGGTGGGGCCCCCCC
CACGGTTGGT