EY744771

Overview
NameEY744771
Unique NameEY744771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY744771 vs. ExPASy Swiss-Prot
Match: CND2_MOUSE (Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.184e-13
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 3 
Query:  378 QIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDAVHAPSV*GPLVGSLGLDKKTNKKPSQPGE 668
            QI E    CIKL+SENKI   N + L LID +SEI+K +   DAE TNF+ A+ TL+A  KIY+VRVDAVHA      ++G LG D     + S  G+
Sbjct:  101 QITEHYSTCIKLSSENKITTKNAFGLHLIDFMSEILKQK---DAEPTNFKVAAGTLDASTKIYAVRVDAVHADVY--RVLGGLGKDTPPQGEESHSGD 193
[Close]
BLAST of EY744771 vs. ExPASy Swiss-Prot
Match: CND2_HUMAN (Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.626e-12
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 3 
Query:  360 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDAVHAPSV*GPLVGSLGLD 632
            P  +  QI E    CIKL++ENKI   N + L LID +SEI+K +   D E TNF+ A+ TL+A  KIY+VRVDAVHA      ++G LG D
Sbjct:  100 PKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQK---DTEPTNFKVAAGTLDASTKIYAVRVDAVHADVY--RVLGGLGKD 186
[Close]
BLAST of EY744771 vs. ExPASy Swiss-Prot
Match: CND2_XENLA (Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.998e-11
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 3 
Query:  360 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDAVHAPSV*GPLVGSLGLDKKTNK 647
            P L+  QI +    CIKL+ ENKI   N + L LID++ +I+K +   D+E TNF+ A+ TL+A  KIY+VRVDAVHA      ++G LG + +  +
Sbjct:   90 PKLNNTQISDHYSTCIKLSQENKITTKNAFGLHLIDYMGDILKHK---DSELTNFKVAAGTLDASAKIYAVRVDAVHADVY--KVLGGLGKESQATE 181
The following BLAST results are available for this feature:
BLAST of EY744771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CND2_MOUSE4.184e-1348.98Condensin complex subunit 2 OS=Mus musculus GN=Nca... [more]
CND2_HUMAN4.626e-1248.91Condensin complex subunit 2 OS=Homo sapiens GN=NCA... [more]
CND2_XENLA2.998e-1143.30Condensin complex subunit 2 OS=Xenopus laevis GN=n... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-D02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744771 ID=EY744771; Name=EY744771; organism=Citrus sinensis; type=EST; length=1000bp
CCACGCGTCCGGTTCCGATGTTACAGTAGAAAACCAAACACGCCCTTAGT
ACAACTTACGCTTGTTGTTCAACTCCCAAACACGCCTTAGCGCACTTTTC
TTTCGACGTACGCTACGGTTGTTTAACTCCTTCCATTTTCAAATTTTTAT
TTTTCTTTGTCCTTAAAATGTCGGAGGCGTTGAGCCCGAGACAAAGGGGC
ACGATGTCGAACCGACTCCATTCTCCAACAAGGCAAAGGCAATTCTTCTT
AGGCTCCAACAACGACCAACTCGAGCGTGAGCAGGCGCGTGCTGCACGCG
CCGCCGCCATCCGCCGCCGCAAGGCCACCTCCACCTCGTCCTCCCCACTT
CCTGAAGACCCTTGCCTCAGCGAAGAGCAAATCGTTGAGTTGTTACAAAA
CTGCATCAAGCTTGCTAGTGAAAATAAAATAAACCAGAACAACACTTGGG
AGCTGAAGCTGATAGACCACCTTAGTGAGATCATTAAAGTTGAAACAGTT
GGAGATGCAGAGACTAATTTCCAAAAGGCAAGTTGTACGTTGGAGGCAGG
GGTGAAAATTTACTCTGTGAGGGTTGATGCAGTGCATGCCCCAAGCGTAT
AAGGCCCCTTGGTGGGATCACTCGGGCTGGACAAGAAGACAAATAAGAAA
CCTTCCCAGCCGGGGGAAAAATGTTGACAACAGGACCGAAGCCAATCATC
CAAAAAAAAACCTTGGAAAAAAAAATTTCACCAAGGGCAACACCAGGACC
CCTCTTTTGAAACTTTTAAAGGAAAAAAAGTTTGAGGGTGGCTTTTGGGG
GGGGATCCCCTAATCCCCTAACAAAATTTCGGGAAGGTTTGGAAAGAAGG
GGGGAACCCCAGGAGCCCCCCCCACGGGAATAAACTTTGGGGAAATATTG
GGGGGGAAGGCGGGGGGGGCTTTTTTTTATTTTTTTTTATAAAAAAGGGG
CCGGGGGGGGGGGGGGGGGAAACTTCATCCCACCTCCCACACCCCCAAAA
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