EY744769

Overview
NameEY744769
Unique NameEY744769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744769_ssr24 microsatellite EY744769_ssr24:24..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY744769 vs. ExPASy Swiss-Prot
Match: FACR2_ARATH (Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.184e-14
Identity = 60/152 (39.47%), Postives = 81/152 (53.29%), Query Frame = 1 
Query:  139 MGALFLNSLS---VAPNKFVKAFENNCDLCLLRKKRSI----MHCQGGGKTTRSSG------VSPALKERSTVTDTAAGS-------LVLSPNGKGHAEIV--VQDLVPFGGQATSLVELQDGIGIVKFLKAKNFFVTGATGFLAKVLIEKI 528
            M ALFL+S S   VA NK  +   +     ++R K+          GGG   R+S       VS  LK+R  V      S       LVLSPNG G    +  V+ L+PF G   S+V +++G+GI+ FL+ K F +TG+TGFLAKVLIEK+
Sbjct:    1 MEALFLSSSSSSIVASNKLTRLHNHCVWSTVIRDKKRFGPTWCRVGGGGDGGRNSNAERPIRVSSLLKDRGQVLIREQSSPAMDAETLVLSPNGNGRTIEINGVKTLMPFSG--ASMVGMKEGLGIISFLQGKKFLITGSTGFLAKVLIEKV 150
The following BLAST results are available for this feature:
BLAST of EY744769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FACR2_ARATH6.184e-1439.47Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-C12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744769 ID=EY744769; Name=EY744769; organism=Citrus sinensis; type=EST; length=969bp
CAAATCTGCTCTTTTGATCAAGAAACCTAACCTAACCTAACCAAACCCTC
TTCTTATGTTTTTATAGAGATCAGTTAGTTTACTTGTTTATTTTTATTTT
TATTTTTTTGGCTTTCAGGAAGTGTGGCGGTGGAGATGATGGGGGCTTTG
TTCCTTAACTCCCTCTCAGTTGCACCAAATAAATTTGTCAAAGCCTTTGA
GAACAATTGTGACCTGTGCTTGCTGAGGAAGAAAAGAAGCATAATGCATT
GCCAAGGTGGTGGCAAAACGACACGGTCCAGCGGCGTTTCTCCGGCTTTG
AAAGAGAGATCAACGGTAACGGATACAGCTGCTGGAAGCTTAGTTTTATC
TCCGAATGGGAAAGGCCATGCTGAGATTGTTGTTCAAGATTTGGTGCCTT
TTGGTGGACAAGCCACTTCTTTGGTAGAGTTGCAAGATGGAATTGGCATT
GTCAAATTTCTCAAAGCCAAAAATTTTTTCGTTACTGGGGCAACTGGGTT
TCTAGCAAAGGTGCTTATAGAGAAAATTTTTACGAACGGTACCTGATGTG
GGCAAGATCTTTGTGCTGATCAAAGAAAAAAAATGGAAAGAGGCTGCAAT
GGGAAAAATTGAAAAATGAAATTTATTAATTGGCGAAGCTTTTTCAAGTG
GCTGAAAGCCAACTTTATGGAAAAATCCTACCAAGCCTTTTCTGGTTAAA
CCAGGCCTGGTTTCCGGGGGTAGAGAAAAAATTTTGGGGAAAAATAATCC
TTGGGTTCCGAAAAAAAATTCCCCCGGAACGGGGATTGGCAAAAAAAATT
TGAACGTCATTTGGTAAAATTTCCCCGCGGCCATAACCCACTTTTTGAAA
AAAAACAAGCCAAGATTTTGGCGATTGGGTGAATAAACACCCACCAGGGG
GGAACCTTTGGCCGGGGGCTATAAGGGAATGTTTGAACTAAAAGACGCAA
GGAGGCAAAAAAAACTTTA
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