EY679798

Overview
NameEY679798
Unique NameEY679798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679798 vs. ExPASy Swiss-Prot
Match: RH50_ARATH (DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 3.430e-73
Identity = 155/254 (61.02%), Postives = 187/254 (73.62%), Query Frame = 3
Query:    3 ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE-ARFVSSLH**SISWKLILRV*IMLYSLTFPRDSSE*VPPGWKELPTGAGKETQSLSYLVVGHQVSPPAKGYGEKNHNGPP 761
            IL L NLRCAILDEVDILF D++FE ALQ+LI+SSPVTAQYLFVTATLP+EIYNKLVEVFPDC+VVMGP +HR+S  LEEFLVDCSGD  ++KTPETAF NKK+ALLQ++E++PVSKTI+FCNKIETCRKVENI KR DRKE ++ VLPFHAAL QE+RL NM+EFT+S+ +E + F+      S          ++L+   FPRD SE V    +      GK    +   VVG QV   A+   E+N  G P
Sbjct:  521 ILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFD--FPRDPSEYVRRVGRTARGARGKGKAFI--FVVGKQVG-LARRIIERNEKGHP 769          
BLAST of EY679798 vs. ExPASy Swiss-Prot
Match: RH50_ORYSJ (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.307e-64
Identity = 133/253 (52.57%), Postives = 176/253 (69.57%), Query Frame = 3
Query:    6 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARFVSSLH**SISWKLILRV*IMLYSLTFPRDSSE*VPPGWKELPTGAGKETQSLSYL-VVGHQVSPPAKGYGEKNHNGPP 761
            +QL NLRC +LDEVDIL+ +E FE  L  LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++MGPG+HR S  LEE LVDCSGD   +K PETAF NKKSAL+++IE+SPV KTI+FCNKIETCRKVEN L+R DRK ++++VLPFHAALDQ+ R+AN+KEF   ++ ++ F+      S          ++L+   +PRD SE V    +   T  G      +++  VG QVS  A+   E+N  G P
Sbjct:  388 VQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFD--YPRDPSEYVRRVGR---TARGASGNGKAFVFAVGKQVS-LARRVMERNIKGHP 634          
The following BLAST results are available for this feature:
BLAST of EY679798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RH50_ARATH3.430e-7361.02DEAD-box ATP-dependent RNA helicase 50 OS=Arabidop... [more]
RH50_ORYSJ1.307e-6452.57DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-B04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679798 ID=EY679798; Name=EY679798; organism=Citrus sinensis; type=EST; length=969bp
GAATCTTGCAGCTGATAAATCTTAGATGTGCCATTTTGGATGAAGTAGAT
ATACTCTTTAATGATGAGGATTTTGAAGTAGCACTGCAATCTTTGATTAG
TTCTTCACCTGTCACTGCACAATATCTATTTGTGACTGCAACTTTACCTG
TAGAAATATATAACAAGCTAGTTGAAGTTTTTCCAGATTGCAAAGTAGTC
ATGGGACCTGGCATGCACCGTATAAGCCCAGGTCTTGAAGAGTTTCTCGT
AGATTGCAGTGGAGATCAAGAATCAGATAAAACTCCAGAAACAGCTTTTC
TCAACAAGAAATCTGCTCTTCTGCAGCTGATTGAGAAAAGTCCAGTTTCC
AAGACGATTGTTTTCTGCAACAAGATTGAGACATGCAGAAAAGTTGAGAA
TATATTGAAACGTTTTGATAGAAAAGAAACTCGTGTGCGAGTTCTACCAT
TTCATGCTGCTCTTGACCAAGAGACAAGGCTTGCAAATATGAAGGAGTTC
ACTACTTCACGTTCGAAAGAAGCACGTTTTGTTTCTAGTCTGCACTGATA
GAGCATCTCGTGGAAATTGATTTTGCGGGTGTGAATTATGTTGTACTCTT
TGACTTTTCCCCGTGATTCTAGTGAATAAGTGCCCCCTGGGTGGAAAGAA
CTGCCCACAGGTGCTGGGAAGGAAACGCAAAGCCTTTCCTATTTGGTTGT
CGGCCACCAAGTTTCCCCTCCCGCCAAGGGATATGGGGAAAAAAATCACA
ACGGGCCCCCCACTGGCCAGCACTGGCCACTCACCTTTTTGAATCTAAGG
TTTGAAAAAAAAAACAACAAGGGGGAGAGGAATACAACAAAGGAAAATAC
CTTGCGTGGCCCACCTCACCCAAAGGGGGTTGAAAAAAATATCTAAAAAA
ACAAAGCCACATATATGTAAAAGGATGCGGGGGGATATGCATGTCTCAAC
AACGAAAAAAAAAGACAAG
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