EY744765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_HUMAN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.547e-39 Identity = 86/176 (48.86%), Postives = 114/176 (64.77%), Query Frame = 3 Query: 129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLR-PIPFDELKR 653 A Y P++AGSIDGTD PHD A+ RA+L Y P + IGDP T+FV RL+ T ED L++ S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA +ID H+I VDY ++ + GWIP ESGQLRFGGR++PFR P+ P+ ++L R Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYR 177
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_RAT (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus GN=Snrnp35 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 7.677e-39 Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 3 Query: 129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLRPIPFDELKRLRIPPPPEGKNMSR 695 A Y P++AGSIDGTD PHD A+ RA+L Y P + GDP T+FV RL+ T E+ L++ S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA +ID H+I VDY ++ + GWIP ESGQLRFGGR++PFR P+ L ++ P EGK R Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPI------NLPVVKNEPHREGKRERR 184
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_MOUSE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus GN=Snrnp35 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.003e-38 Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 3 Query: 129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLRPIPFDELKRLRIPPPPEGKNMSR 695 A Y P++AGSIDGTD PHD A+ RA+L Y P + GDP T+FV RL+ T E+ L++ S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA +ID H+I VDY ++ + GWIP ESGQLRFGGR++PFR P+ L ++ P EGK R Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPI------NLPVVKNEPHREGKRERR 184
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_BOVIN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus GN=SNRNP35 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.003e-38 Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = 3 Query: 129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPL 623 A Y P++AGSIDGTD PHD A+ RA+L Y P + GDP T+FV RL+ T E+ L++ S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA +ID H+I VDY ++ + GWIP ESGQLRFGGR++PFR P+ Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YTP--NKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPI 166
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_DANRE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 4.976e-38 Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 3 Query: 138 YHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLRPIPFDELKRLRIPPPPEGKNMSR 695 Y P++AGSIDGTD+ PHD + RA+L Y P + GDP T+FV RL+ T+E+ LR SK+G ++ LRLVRD VTG S+ YAF+EY+ ER ++RA+ DA+ I+D +++LVD +++ +PGW P ESGQLRFGGR++PFR P+ R P P G+ R Sbjct: 10 YDPLKAGSIDGTDVEPHDAGVWRAMLAR----YKP--NRGVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPRRLGGGQGGQKESGQLRFGGRDRPFRKPIN-------LSTRRPAEPRGRETER 182
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_XENLA (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus laevis GN=snrnp35 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 8.488e-38 Identity = 77/165 (46.67%), Postives = 108/165 (65.45%), Query Frame = 3 Query: 129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPL 623 A Y P++AGSIDGTD PHD A+ RA+L Y P + GDPH T+FV RLS T+E+ L++ S+YG +K +RLVRD +TG S+GYAF+EY+ E + +A+ DA+ +ID ++ VD+ ++ + GWIP ESGQLRFGGR++PFR P+ Sbjct: 8 AKKYDPLKAGSIDGTDEEPHDRAVLRAMLSR----YVP--NKGVTGDPHLTLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVIDQREVFVDFELERNLKGWIPRRFGGGFGGKKESGQLRFGGRDRPFRKPI 166
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.033e-19 Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 3 Query: 234 YDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKP 608 YDP DP A GDP+ T+FV RL++ +SE +++ YG +K + LV D +T +GYAF+EY R+M+ AY+ A ID ++LVD R + +P W P G G ++P Sbjct: 124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQP 248
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.153e-18 Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 3 Query: 231 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESG---QLRFGGREKPFRAPLRPIP 635 ++DP DP A GD T+FV R+++ T+E LR+ YG +K + +V +G RGYAF+EYE ER+M AY+ A ID ++LVD R + + GW P G +R GR+ R RP P Sbjct: 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.153e-18 Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 3 Query: 231 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESG---QLRFGGREKPFRAPLRPIP 635 ++DP DP A GD T+FV R+++ T+E LR+ YG +K + +V +G RGYAF+EYE ER+M AY+ A ID ++LVD R + + GW P G +R GR+ R RP P Sbjct: 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.153e-18 Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 3 Query: 231 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESG---QLRFGGREKPFRAPLRPIP 635 ++DP DP A GD T+FV R+++ T+E LR+ YG +K + +V +G RGYAF+EYE ER+M AY+ A ID ++LVD R + + GW P G +R GR+ R RP P Sbjct: 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225 The following BLAST results are available for this feature:
BLAST of EY744765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >EY744765 ID=EY744765; Name=EY744765; organism=Citrus sinensis; type=EST; length=1009bpback to top |