EY744765

Overview
NameEY744765
Unique NameEY744765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1009
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744765_ssr206 microsatellite EY744765_ssr206:206..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_HUMAN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.547e-39
Identity = 86/176 (48.86%), Postives = 114/176 (64.77%), Query Frame = 3
Query:  129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLR-PIPFDELKR 653
            A  Y P++AGSIDGTD  PHD A+ RA+L      Y P  +   IGDP  T+FV RL+  T ED L++  S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA   +ID H+I VDY  ++ + GWIP           ESGQLRFGGR++PFR P+  P+  ++L R
Sbjct:    8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYR 177          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_RAT (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.677e-39
Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 3
Query:  129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLRPIPFDELKRLRIPPPPEGKNMSR 695
            A  Y P++AGSIDGTD  PHD A+ RA+L      Y P  +    GDP  T+FV RL+  T E+ L++  S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA   +ID H+I VDY  ++ + GWIP           ESGQLRFGGR++PFR P+       L  ++  P  EGK   R
Sbjct:    8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPI------NLPVVKNEPHREGKRERR 184          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_MOUSE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.003e-38
Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 3
Query:  129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLRPIPFDELKRLRIPPPPEGKNMSR 695
            A  Y P++AGSIDGTD  PHD A+ RA+L      Y P  +    GDP  T+FV RL+  T E+ L++  S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA   +ID H+I VDY  ++ + GWIP           ESGQLRFGGR++PFR P+       L  ++  P  EGK   R
Sbjct:    8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPI------NLPVVKNEPHREGKRERR 184          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_BOVIN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus GN=SNRNP35 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.003e-38
Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = 3
Query:  129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPL 623
            A  Y P++AGSIDGTD  PHD A+ RA+L      Y P  +    GDP  T+FV RL+  T E+ L++  S+YG ++ LRLVRD VTG S+GYAF+EY+ ER + +AY DA   +ID H+I VDY  ++ + GWIP           ESGQLRFGGR++PFR P+
Sbjct:    8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YTP--NKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPI 166          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_DANRE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.976e-38
Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 3
Query:  138 YHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPLRPIPFDELKRLRIPPPPEGKNMSR 695
            Y P++AGSIDGTD+ PHD  + RA+L      Y P  +    GDP  T+FV RL+  T+E+ LR   SK+G ++ LRLVRD VTG S+ YAF+EY+ ER ++RA+ DA+  I+D +++LVD  +++ +PGW P           ESGQLRFGGR++PFR P+           R P  P G+   R
Sbjct:   10 YDPLKAGSIDGTDVEPHDAGVWRAMLAR----YKP--NRGVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPRRLGGGQGGQKESGQLRFGGRDRPFRKPIN-------LSTRRPAEPRGRETER 182          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: U1SBP_XENLA (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus laevis GN=snrnp35 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 8.488e-38
Identity = 77/165 (46.67%), Postives = 108/165 (65.45%), Query Frame = 3
Query:  129 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKPFRAPL 623
            A  Y P++AGSIDGTD  PHD A+ RA+L      Y P  +    GDPH T+FV RLS  T+E+ L++  S+YG +K +RLVRD +TG S+GYAF+EY+ E  + +A+ DA+  +ID  ++ VD+  ++ + GWIP           ESGQLRFGGR++PFR P+
Sbjct:    8 AKKYDPLKAGSIDGTDEEPHDRAVLRAMLSR----YVP--NKGVTGDPHLTLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVIDQREVFVDFELERNLKGWIPRRFGGGFGGKKESGQLRFGGRDRPFRKPI 166          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.033e-19
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 3
Query:  234 YDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESGQLRFGGREKP 608
            YDP  DP A GDP+ T+FV RL++ +SE  +++    YG +K + LV D +T   +GYAF+EY   R+M+ AY+ A    ID  ++LVD  R + +P W P             G     G ++P
Sbjct:  124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQP 248          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.153e-18
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 3
Query:  231 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESG---QLRFGGREKPFRAPLRPIP 635
            ++DP  DP A GD   T+FV R+++ T+E  LR+    YG +K + +V    +G  RGYAF+EYE ER+M  AY+ A    ID  ++LVD  R + + GW P             G    +R  GR+   R   RP P
Sbjct:   88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.153e-18
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 3
Query:  231 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESG---QLRFGGREKPFRAPLRPIP 635
            ++DP  DP A GD   T+FV R+++ T+E  LR+    YG +K + +V    +G  RGYAF+EYE ER+M  AY+ A    ID  ++LVD  R + + GW P             G    +R  GR+   R   RP P
Sbjct:   88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225          
BLAST of EY744765 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.153e-18
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 3
Query:  231 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDNVTGASRGYAFVEYETEREMRRAYEDAHHSIIDDHQILVDYNRQQLMPGWIPXXXXXXXXXXXESG---QLRFGGREKPFRAPLRPIP 635
            ++DP  DP A GD   T+FV R+++ T+E  LR+    YG +K + +V    +G  RGYAF+EYE ER+M  AY+ A    ID  ++LVD  R + + GW P             G    +R  GR+   R   RP P
Sbjct:   88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225          
The following BLAST results are available for this feature:
BLAST of EY744765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
U1SBP_HUMAN1.547e-3948.86U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_RAT7.677e-3946.03U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_MOUSE1.003e-3846.03U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_BOVIN1.003e-3849.09U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_DANRE4.976e-3844.09U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
U1SBP_XENLA8.488e-3846.67U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
RU17_ARATH3.033e-1936.80U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi... [more]
RU17_MOUSE1.153e-1836.96U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m... [more]
RU17_HUMAN1.153e-1836.96U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
RU17_BOVIN1.153e-1836.96U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-C08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744765 ID=EY744765; Name=EY744765; organism=Citrus sinensis; type=EST; length=1009bp
GCGAAAACCACTGGGGTTCTAAGAAAACAAGGTGTTCGGTCAATTGTCTA
AAAGAAGTCTACAACGCTGCCCATTACCACCTCCCCCCGTTCACAATGAG
TGGGAACAACATAAACTCGGTGTTCTACGCCGGGTCGTATCATCCGATTC
AAGCTGGTAGCATTGACGGCACCGATATTCACCCCCACGATAACGCCATT
TGTCGTGCTCTGCTCTGCTCCTCCGCGGGCCTCTATGACCCCCTCGGTGA
CCCCAAGGCCATTGGTGACCCTCATTGCACTGTCTTTGTGGGTCGGCTCT
CTCATTTTACTTCCGAAGACACTCTTCGCAAGGCTATGAGCAAGTATGGT
AGGGTCAAGAACTTACGGTTAGTGAGGGACAATGTTACGGGTGCATCGCG
TGGTTATGCTTTTGTTGAATATGAAACTGAAAGAGAGATGCGCCGTGCAT
ATGAGGATGCTCACCACTCCATTATTGATGATCATCAAATTTTAGTTGAT
TATAACAGGCAACAGTTGATGCCTGGGTGGATTCCAAGGAGGTTAGGAGG
AGGCCTTGGAGGTAAGAAAGAGTCAGGGCAGCTTCGCTTTGGAGGAAGAG
AAAAACCATTTAGAGCTCCCTTGCGTCCAATTCCATTTGATGAGCTAAAG
AGGCTTCGCATTCCTCCTCCCCCGGAAGGAAAGAATATGTCACGTTTTCA
GGTCCCATCCCCCCTAGAAATAAAAGGGGGTCTAAAAAAAAAGGAAAAAA
CCTTGCCAGAAGGGACCGGGAAACCACGGGAAAAACCTTACTAAACAAAA
GTACCCCCCTGGGAAAAAGGAAAAAAAAACCTTATAAAAACTTCTTTGGA
AAAAAGAAAAAACCCCCTCCCTAAAAAACTCCTTTGGAAAAAAAGGGGGG
GTCCCAAAAAAAAAAATTTTTTGGGGAAAAAAAAAAAAAAAAAAACCCAT
TTAAAAAAAAAAAAAAAACCAAACAAAAAAAAAAGGGGGGAAAAGAAAAG
GGGGGTGCC
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