EY720138

Overview
NameEY720138
Unique NameEY720138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720138_ssr513 microsatellite EY720138_ssr513:513..524. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_HALOH (MutS2 protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.969e-14
Identity = 62/190 (32.63%), Postives = 94/190 (49.47%), Query Frame = 1
Query:   37 ELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            +LE +I  CID +   I D AS  L  IR E  R    ++  L  +         +   L+T R +R  V +K+S+K     GI  + S+SG TYFMEP   V+ NN    L  +E  E   IL  L+  I +  R++   ++ V  +D+ FARA F+  ++G+ P ++ +        INI   +HPLL
Sbjct:  136 QLENEINRCID-EHGEIKDSASRKLRSIRREMDRIEGKINDKLNSIINNTRYQEMLQDKLVTIRGNRYVVPVKSSYKNTF-SGIVHDQSTSGLTYFMEPMAIVKLNNRLGELKRAEEQEIYRILKKLSENIKEHTRDLSDNLEMVSLLDVDFARARFSIEIEGIEPGINDKGF------INIRGGRHPLL 317          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_ALKOO (MutS2 protein OS=Alkaliphilus oremlandii (strain OhILAs) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.639e-14
Identity = 58/189 (30.69%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   40 LEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            +E+KI  CI  +  +  D AS +L  IR +     + + + L  +         +  P+IT R+ R  V +K  H+  +P G+  + SSSGAT F+EP   VE NN    L   E  E   IL  + A I +   +IK     + E+D  FA+   +  M  V P+L++      +  I+I++ +HPLL
Sbjct:  131 IEDKIELCIISETELS-DNASPELRNIRRQISSKNDAIRNKLNSIITSASNQKYLQDPIITMRQDRYVVPVKQEHRGNIP-GLIHDQSSSGATIFVEPMAVVELNNQLKELRLKEQVEIERILMEIAAMIAERSDDIKSNQIILKELDFIFAKGKLSVEMRAVEPVLNT------NKKISIKNGRHPLL 311          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_CLONN (MutS2 protein OS=Clostridium novyi (strain NT) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.128e-13
Identity = 60/189 (31.75%), Postives = 93/189 (49.21%), Query Frame = 1
Query:   40 LEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            LEE+I  CI  +  I  DRAS  L  IR   K    ++ + +  +      +  + + + T R  R  + +K  HK  +P G+  + S+SGAT F+EP   V+ NN    L   E AE   IL+ L+  + ++   IK   D + E+D  FA+A +A  +  + PI+S   H       NI + KHPL+
Sbjct:  131 LEEEISKCIIGEEEIS-DRASTTLFNIRRSLKDKTSSIKARVNSLIRTY--SSHLQENIYTVRGERYVLPVKVEHKGAVP-GLVHDQSASGATLFIEPMSLVDLNNEIKELRLKEKAEIDRILAFLSGKVYENVDVIKVDADILWELDFIFAKAKYAQKLGAIMPIISEDGH------FNIINAKHPLI 309          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_SYNY3 (MutS2 protein OS=Synechocystis sp. (strain PCC 6803) GN=mutSB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13
Identity = 57/192 (29.69%), Postives = 97/192 (50.52%), Query Frame = 1
Query:   37 ELEEKIGFCI--DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            ELE+ I  C+  D K   + +RAS  L  IR + K   E +   L+K+  +  Q+  + + +IT+R  R  + IKA +K  +P GI  + S+SG T ++EP+  VE  N   +    E  EE  IL  L+  + +   ++++L+     +DLA AR  ++ W+    P   +      +  I +  ++HPLL
Sbjct:  136 ELEQAIHHCLGEDGK---VAERASPKLGEIRQKLKAVREQIQQKLQKIIQR--QSNALQEAVITQRGDRFVLPIKAGYKEQMP-GIVHDSSASGNTLYVEPQAIVELGNKLRQARRQEQTEEERILRQLSDQVLEVLLDLEHLLAIATRLDLATARVRYSFWLGAHPPQWLTPGD---EKPITLRQLRHPLL 318          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_PELTS (MutS2 protein OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13
Identity = 56/189 (29.63%), Postives = 99/189 (52.38%), Query Frame = 1
Query:   85 ILDRASEDLELIR----AERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLLLGVLFKMFVRL 639
            + D AS +L  IR    A + +  E+L+ +++  + + +    + +P++T R  R  V +K  H+  +P GI  + S+SGAT F+EP   VE NN   RL  +E  E   IL+ L+A + +    I   ++ + E+D   ARA ++  +D   P+L        ++ ++I   +HPLL G +  + +RL
Sbjct:  143 VADGASPELAQIRRRLAAAQAQVKEHLEHIIRSPSYQKY----LQEPIVTIREGRYVVPVKIEHRSQVP-GIVHDQSASGATLFIEPMAVVEKNNELRRLMAAEKREIQRILAELSAGVAQHAGPIGASLEALGELDFIMARARYSQKLDAWAPLLEG------EACMDIRRGRHPLLQGEVVPIDIRL 320          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOPH (MutS2 protein OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   85 ILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            I D AS  L+ +R + K   + +   L  +       G +   +IT R  R C+ IK  +K     G+  + SS+G+T F+EP   V+ NN    L+  E  E   IL+ L+  +   +  +KY    + E+D  FARAG +  M       +SQ H      INI+  +HPL+
Sbjct:  150 IADDASPGLKSVRRQIKITNDKIHESLGSILNSASTKGMLQDAIITMRNGRYCLPIKQEYKNTF-QGMMHDQSSTGSTAFIEPMAIVKLNNELAELAVREQEEIEKILAELSNLVATEKYNLKYNQTTLAELDFIFARAGLSKNMK------ASQPHFNNRHYINIKKGRHPLI 316          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_THERP (MutS2 protein OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 56/179 (31.28%), Postives = 87/179 (48.60%), Query Frame = 1
Query:   85 ILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSS-----INIESIKHPLL 606
            +LD AS +L  IR   K   E L   L+++ A+  +A  I    +T R  R  + ++A  +  +P GI  +VS SG T F+EP   +E NN    L  +E  E   IL +LT  I  +  E+  +++    +DLA A+A  A  +D V P L   S   +        + + + +HPLL
Sbjct:  146 VLDTASPELAAIRRSLKEAHERLLERLRRLLAERQEA--IQDAYVTIRDGRYVIPVRADRRQAVP-GITHDVSGSGQTLFVEPFEVLELNNRWRELQAAETREIERILRVLTQRIADAADELLQIVEAGAALDLALAKARLAYDLDAVEPELLEPSGPTVPEGHPFLRVRLRAARHPLL 321          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOB6 (MutS2 protein OS=Clostridium botulinum (strain 657 / Type Ba4) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 1
Query:   85 ILDRASEDLELIRAERKRN----MENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            I DRAS  L  IR   K       + ++SL++  ++ +       + + T RR R  + +KA HK  +P G+  + SS+GAT F+EP   V  NN    L   E AE   IL++L+A I  +   +K   + V E+D  FA+A FA   +  CP ++       +  ++I   +HPL+
Sbjct:  145 IADRASSTLYNIRRSLKEKNYSVRDKINSLVRSYSSYL------QENIYTVRRDRYVLPVKAEHKGAVP-GLVHDQSSTGATLFIEPMSLVNLNNEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTCPTIND------EGIVDIIEGRHPLI 309          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_EUBE2 (MutS2 protein OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 ILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            I D AS +L  IR  +    + + S L K+         +   +IT R+ R C+ +KA +K   P G+  + SS+G+T F+EP   V+ NN    L   E AE   IL+ L+A   +   E+    + ++E+D  FA+A  A  M    P++++         INI+  +HPL+
Sbjct:  140 ISDDASSNLRSIRRSKSIANDRIHSELNKLLNSPTYRTYLQDYVITTRQGRYCLPVKAEYKSAFP-GMIHDQSSTGSTLFIEPAAVVKLNNDIRELELKEAAEIEVILADLSAKAGEHTEELLCDYEILVELDCIFAKAQLARHMHASRPVMNT------SGIINIKKGRHPLI 306          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_BACA2 (MutS2 protein OS=Bacillus amyloliquefaciens (strain FZB42) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 57/194 (29.38%), Postives = 94/194 (48.45%), Query Frame = 1
Query:   37 ELEEKIGFCIDCKLLIILDRASEDLELIRAERK----RNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            +LE +I  CID    + LD AS  L  IR + +    R  + L+S+L+  +A       +   ++T R  R  + +K  ++     GI  + SSSGAT F+EP+  V+ NN   +    E  E   IL +LT    +  +EI   ++ +  +D  FA+A +A  M    P+++    +RL      +  +HPLL
Sbjct:  131 DLEREINSCIDDHGEV-LDHASPALRGIRTQLRTLESRVRDRLESMLRSSSASKM----LSDTIVTIRNDRFVIPVKQEYRSSY-GGIVHDTSSSGATLFIEPQAIVDMNNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQDVEVLQTLDFIFAKARYAKAMKATKPLMNGDGFIRL------KKARHPLL 312          
The following BLAST results are available for this feature:
BLAST of EY720138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MUTS2_HALOH2.969e-1432.63MutS2 protein OS=Halothermothrix orenii (strain H ... [more]
MUTS2_ALKOO8.639e-1430.69MutS2 protein OS=Alkaliphilus oremlandii (strain O... [more]
MUTS2_CLONN1.128e-1331.75MutS2 protein OS=Clostridium novyi (strain NT) GN=... [more]
MUTS2_SYNY34.288e-1329.69MutS2 protein OS=Synechocystis sp. (strain PCC 680... [more]
MUTS2_PELTS4.288e-1329.63MutS2 protein OS=Pelotomaculum thermopropionicum (... [more]
MUTS2_CLOPH9.552e-1330.46MutS2 protein OS=Clostridium phytofermentans (stra... [more]
MUTS2_THERP3.630e-1231.28MutS2 protein OS=Thermomicrobium roseum (strain AT... [more]
MUTS2_CLOB63.630e-1231.46MutS2 protein OS=Clostridium botulinum (strain 657... [more]
MUTS2_EUBE24.741e-1230.46MutS2 protein OS=Eubacterium eligens (strain ATCC ... [more]
MUTS2_BACA26.191e-1229.38MutS2 protein OS=Bacillus amyloliquefaciens (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-F01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720138 ID=EY720138; Name=EY720138; organism=Citrus sinensis; type=EST; length=852bp
CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCAGAGTTAGAGGAAAA
AATTGGATTTTGCATAGATTGCAAGCTTTTAATTATCCTTGATAGAGCTA
GTGAGGATTTGGAGCTTATTAGGGCAGAAAGGAAGAGGAACATGGAAAAT
CTGGATTCTCTATTGAAGAAGGTAGCAGCTAAAATTTTCCAGGCTGGGGG
CATTGACAAACCCTTGATAACCAAGCGCCGGTCTAGAATGTGTGTGGGTA
TTAAGGCTTCTCACAAGTATTTACTTCCAGATGGTATAGCCCTGAATGTT
AGCAGTTCTGGTGCAACATATTTCATGGAACCTAAAGGGGCAGTTGAGTT
CAACAATATGGAAGTGAGGCTTTCAAACTCTGAGATAGCTGAGGAAACAG
CCATTTTGAGCTTGCTTACTGCANAAATANCGAAATCAGAAAGAGAGATA
AAGTATCTGATGGATAGAGTTCTAGAAATTGATCTTGCTTTTGCAAGAGC
TGGTTTTGCTCCATGGATGGATGGGGTCTGTCCCATTTTAAGTTCACAGA
GCCATGTCAGGCTTGATTCCAGTATAAACATTGAAAGCATCAAACATCCA
TTGCTTCTTGGGGTCCTCTTTAAGATGTTTGTCAGGCTGCTTCATCAACT
CTAATCCACTAAAATCGGATGTGGAAGATAGTGAAATGACCGGTGCAAGT
TTGTCAACAAGAATTTCGGATTTCCCTGGTACAATAGACCTAAAGTTTAA
TGCGAACAAGAGGGGGGTGATCGCGGGTCCTAGAGTGGGCGCGGAAGGGG
TTCCTGGATGAGCTGGGCCTGGGGCCTCGATTGGGAAGGTGGTTGGAGTT
TC
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