EY679691

Overview
NameEY679691
Unique NameEY679691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679691_ssr1 microsatellite EY679691_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.808e-86
Identity = 134/163 (82.21%), Postives = 147/163 (90.18%), Query Frame = 1
Query:  193 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQAK 681
            YEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  KTKLEVGGNV+G++DLGPGRFGSEAV+VPR PGT SEEDDGYLIFF HDE TGKS V+VIDAK MSA+PVAVVE   +VPY FHAFFV+++QL+EQAK
Sbjct:  378 YEMRFNMKTGEASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAK 540          

HSP 2 Score: 66.2402 bits (160), Expect = 4.808e-86
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 EEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 139
            EEEDE+VLITCRL+ P+LD+V GAVKEKL+NFSNEL+   E+ FN+
Sbjct:  342 EEEDEIVLITCRLENPNLDVVGGAVKEKLDNFSNELY---EMRFNM 384          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.664e-83
Identity = 129/161 (80.12%), Postives = 141/161 (87.58%), Query Frame = 1
Query:  193 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQ 675
            YEMRFN+KTG ASQK+LS SAVDFPR+NE YT RKQRYVYGTILD+I KV GIIKFDLHAEP+  K KLEVGGNV+GIFDLGPGR+GSEAVFVPRE G  SEEDDGYLIFF HDE TGKS VNVIDAKTMSA+PVAVVE   +VPY FHAFFV++EQL+ Q
Sbjct:  382 YEMRFNMKTGAASQKQLSVSAVDFPRINESYTTRKQRYVYGTILDNITKVKGIIKFDLHAEPEAGKKKLEVGGNVQGIFDLGPGRYGSEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAFFVNEEQLQWQ 542          

HSP 2 Score: 69.3218 bits (168), Expect = 1.664e-83
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 EEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 139
            EE DEVVLITCRL+ PDLDMVNGAVKEKLENF NEL+   E+ FN+
Sbjct:  346 EEGDEVVLITCRLENPDLDMVNGAVKEKLENFKNELY---EMRFNM 388          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.170e-83
Identity = 131/164 (79.88%), Postives = 145/164 (88.41%), Query Frame = 1
Query:  193 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQAKL 684
            YEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  K KLEVGGNV+G++DLGPG+FGSEAV++PR PG  SEEDDGYL+ F HDE  GKS V+VIDAKTMSADPVAVVE   +VPY FHAFFV++EQL+EQAKL
Sbjct:  380 YEMRFNMKTGEASQKKLSASTVDFPRVNENYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDHGKEKLEVGGNVQGLYDLGPGKFGSEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQEQAKL 543          

HSP 2 Score: 62.003 bits (149), Expect = 2.170e-83
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 2
Query:    2 EEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 139
            EEEDEVVLITCRL  P LD V G V+EKLENFSNEL+   E+ FN+
Sbjct:  344 EEEDEVVLITCRLQNPKLDNVGGTVQEKLENFSNELY---EMRFNM 386          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 1.665e-80
Identity = 124/161 (77.02%), Postives = 142/161 (88.20%), Query Frame = 1
Query:  193 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQ 675
            YEMRFN+KTG ASQK+LSASAVDFPR+NECYTG+KQRYVYGTILDSIAKVTGIIKFDLHAE +  K  LEVGGN++GI+DLG GR+GSEA++VPRE   ++EEDDGYLIFF HDE TGKS V VIDAKTMSA+PVAVVE   +VPY FHA FV++EQL+EQ
Sbjct:  378 YEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQEQ 535          

HSP 2 Score: 68.1662 bits (165), Expect = 1.665e-80
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 EEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 139
            EEEDEVVLITCRL+ PDLDMV+G VKEKLENF NEL+   E+ FN+
Sbjct:  342 EEEDEVVLITCRLENPDLDMVSGKVKEKLENFGNELY---EMRFNM 384          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.561e-22
Identity = 58/160 (36.25%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  196 EMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGT-SSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEE 672
            +++ +L TG+  +  +SA  +DF  +N  + GR  RYVY  I D + K++G++K D+     ++ T        R ++  G G +G E  FV R+PG   +EEDDGY++ + HDE TG+S   V+DAK+   + VA V    +VPY FH  FV +  L +
Sbjct:  443 KVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTV------ARRMY--GSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNK 594          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.249e-20
Identity = 59/162 (36.42%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  202 RFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIF---DLGPGRFGSEAVFVPREPGTSS-EEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQ 675
            R  LK+G  S+  LSA  +DF  ++  Y+GRK RY Y  + D + K+ G++K D            E+ G    +    + G G FG E  FVP     S  EEDDGY++ + HDE  G+SS  V+DA++   + +A V    +VPY FH  FV++ +L  Q
Sbjct:  218 RIELKSGSVSRTLLSAENLDFGVIHRGYSGRKSRYAYLGVGDPMPKIRGVVKVDF-----------ELAGRGECVVARREFGVGCFGGEPFFVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGFHGLFVTEAELLSQ 368          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.195e-18
Identity = 59/163 (36.20%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  196 EMRFNLKTGLASQKRLSASAVDFPR--VNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQA 678
            E+R NLKTG ++++ + +  V+     VN    GRK RY Y  + +   KV+G  K DL              G +R  +  G G++G E +F+P   G   EED GY++ F HDE+  KS + +I+A  M  +  A V   ++VPY FH  F+SKE L +QA
Sbjct:  511 EIRLNLKTGESTRRPVISEQVNLEAGMVNRNLLGRKTRYAYLALTEPWPKVSGFAKVDLST------------GEIRK-YIYGEGKYGGEPLFLPSGDG---EEDGGYIMVFVHDEEKVKSELQLINAVNMKLE--ATVTLPSRVPYGFHGTFISKEDLSKQA 655          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.785e-18
Identity = 59/161 (36.65%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  196 EMRFNLKTGLASQKRLSASA-VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQ 675
            E+R N++T  +++K +     ++   +N  Y GRK ++VY  I D   K +GI K D+      E             F+ GP RFG E  FVP   G   EED GY++ F  DE+  +S   V+DA  M    VA V    +VPY FH  FVS+ QL+EQ
Sbjct:  433 EIRLNMRTKESNRKVIVTGVNLEAGHINRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQNGTVSE-------------FNYGPSRFGGEPCFVPEGEG---EEDKGYVMGFVRDEEKDESEFVVVDATDMKQ--VAAVRLPERVPYGFHGTFVSENQLKEQ 575          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.578e-17
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  196 EMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE--EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQA 678
            E+R + +TG ++++ +   +    ++   VN    GR+ RY Y  + +   KV+G  K DL      E TK          F+ G GRFG E  FVP +P  +    EDDGY++ F HDE+ G S + V++A  M  +  A V+  ++VP+ FH  F++ ++LE QA
Sbjct:  452 EIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG---ELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 603          
BLAST of EY679691 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.863e-16
Identity = 57/166 (34.34%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  196 EMRFNLKTGLASQKRLSASAVDFP----RVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE-EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEFTTKVPYRFHAFFVSKEQLEEQA 678
            E+R NLKTG ++++ +   +V        VN    GRK RY Y  I +   KV+G  K DL              G V+  F  G  ++G E  F+PR  G  S+ EDDGY++ F HDE++ +S +++++A T+  +  A V+  ++VPY FH  FV+   +  QA
Sbjct:  441 EIRLNLKTGKSTRRTIIPGSVQMNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLST------------GEVKNHF-YGGKKYGGEPFFLPR--GLESDGEDDGYIMSFVHDEESWESELHIVNAVTLELE--ATVKLPSRVPYGFHGTFVNSADMLNQA 589          
The following BLAST results are available for this feature:
BLAST of EY679691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD1_PEA4.808e-8682.21Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA1.664e-8380.12Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PHAVU2.170e-8379.88Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH1.665e-8077.02Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH1.561e-2236.25Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA7.249e-2036.42Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED9_ARATH5.195e-1836.209-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED6_ARATH6.785e-1836.659-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
NCED1_MAIZE2.578e-1733.539-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED5_ARATH4.863e-1634.34Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-H12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679691 ID=EY679691; Name=EY679691; organism=Citrus sinensis; type=EST; length=946bp
GGAGGAGGAGGATGAAGTGGTTCTGATCACTTGCCGCCTAGACAAGCCGG
ATCTAGACATGGTCAATGGGGCTGTCAAAGAAAAGCTAGAAAATTTCTCA
AATGAACTGTGGGATACCTGTGAAATATTCTTTAATTTGTAGTACTTCTT
CCACTGCTAAGTTTGTTCTGATTGTTTATTTCTATAAGCAGGTATGAGAT
GAGATTCAACTTGAAAACTGGCCTAGCTTCACAAAAGAGATTATCAGCAT
CCGCTGTTGATTTTCCTAGGGTGAATGAGTGCTACACTGGCAGGAAGCAA
AGATATGTGTATGGAACAATACTAGATAGCATTGCAAAAGTCACAGGGAT
CATCAAATTTGATCTGCATGCTGAACCAGACGAAGAGAAAACAAAGCTTG
AAGTTGGAGGAAATGTGAGAGGCATCTTTGACCTGGGCCCTGGAAGATTT
GGTTCAGAGGCTGTTTTTGTTCCTAGAGAGCCTGGTACCTCTTCTGAAGA
AGATGATGGATACTTAATATTCTTCTCTCATGATGAGAAAACCGGAAAGT
CATCAGTGAACGTGATTGATGCAAAAACAATGTCAGCTGATCCTGTTGCA
GTTGTCGAATTTACCACTAAGGTTCCATACCGATTTCATGCCTTCTTTGT
GTCAAAGGAACAACTTGAAGAACAAGCCAAATTGGGGATCGTGGGCAGAA
ACTTTGTGACAAGTGAAAACAAAAGGAAAAAAAAAAAAATTCTATAAACC
TCTTCCGCCGAGGCTGCGTTGGGGTTGGGGGGGTTAGGGCCTTTATTGTA
AAGGCATGAAAACCCCGAGAGAATAAAAAAAAAATTTTTTTTTGAGTTTG
TGCAATTTATTTTTTTAGCCGCCAGTTATTCCTCCCCCCCCCAGAAAGGT
TTCTTCTTTTCCTGTTTCTTAACTCTTTTTTCTCCGAAATGGGGGG
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