EY679687

Overview
NameEY679687
Unique NameEY679687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length307
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11153 contig Csv1_Contig11153:79..385. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
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BLAST of EY679687 vs. ExPASy Swiss-Prot
Match: YNCD_ECOLI (Probable tonB-dependent receptor yncD OS=Escherichia coli (strain K12) GN=yncD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 2 
Query:   14 NGDSSGNKTYQKNTPSLSVMYAFTPELHGYISAGKGFETPTQAELAYAPGNIEGFNFGLKPSESTQYEVGLKAQLSDTRINAAVFQITTEDELVVDQS 307
            NGD SG+ +Y K  P+ S+ YA T   + Y++AG+GFETPT  EL+Y      G N GLKPS +   E+G K ++ D  ++ A+FQ  T+DE+VVD S
Sbjct:  435 NGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNLGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSS 532
The following BLAST results are available for this feature:
BLAST of EY679687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YNCD_ECOLI1.270e-1845.92Probable tonB-dependent receptor yncD OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-H08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679687 ID=EY679687; Name=EY679687; organism=Citrus sinensis; type=EST; length=307bp
CCAGTTCCTGAGCAACGGCGACTCCAGCGGCAACAAGACCTACCAGAAGA
ACACGCCGTCCTTGAGCGTGATGTACGCCTTCACGCCCGAACTGCACGGC
TACATCAGTGCCGGCAAGGGTTTCGAGACGCCGACTCAGGCGGAACTGGC
CTATGCGCCAGGCAATATCGAAGGGTTTAACTTCGGCCTGAAGCCGTCCG
AAAGCACGCAATATGAAGTGGGCTTGAAGGCACAGCTGAGCGACACCCGG
ATCAACGCCGCTGTCTTCCAGATCACCACCGAGGACGAGTTGGTGGTGGA
TCAATCG
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