EY679673

Overview
NameEY679673
Unique NameEY679673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: RH50_ARATH (DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2)

HSP 1 Score: 387.111 bits (993), Expect = 8.563e-107
Identity = 189/258 (73.26%), Postives = 221/258 (85.66%), Query Frame = 3
Query:   12 GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRIMKKNRKAHPLHNVPSAF 785
            GIL L NLRCAILDEVDILF D++FE ALQ+LI+SSPVTAQYLFVTATLP+EIYNKLVEVFPDC+VVMGP +HR+S  LEEFLVDCSGD  ++KTPETAF NKK+ALLQ++E++PVSKTI+FCNKIETCRKVENI KR DRKE ++ VLPFHAAL QE+RL NM+EFT+S+ +E  LFLVCTDRASRGIDF+GVDHVVLFDFPRDPSEY               KAFIFVVGKQV LA+RI+++N K HP+H+VP+A+
Sbjct:  520 GILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIERNEKGHPVHDVPNAY 777          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: RH50_ORYSJ (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 2.857e-94
Identity = 164/255 (64.31%), Postives = 205/255 (80.39%), Query Frame = 3
Query:   12 GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRIMKKNRKAHPLHNVP 776
            G +QL NLRC +LDEVDIL+ +E FE  L  LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++MGPG+HR S  LEE LVDCSGD   +K PETAF NKKSAL+++IE+SPV KTI+FCNKIETCRKVEN L+R DRK ++++VLPFHAALDQ+ R+AN+KEF   ++ ++ +FLVCTDRASRGIDFA V+HVVLFD+PRDPSEY               KAF+F VGKQVSLA+R+M++N K HPLH+VP
Sbjct:  386 GFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADS-MFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVP 639          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.988e-14
Identity = 60/208 (28.85%), Postives = 99/208 (47.60%), Query Frame = 3
Query:   45 ILDEVDILFNDEDFEVALQSLISSSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 638
            +LDE D +F D  F   ++  ++     A        Q + VTAT+ + +   + E F   + +    +H+         +  SG ++           K  ALLQ++E S    SK +VFCN + + R V++ L      E ++  + +H  +  E R+ N+K+F         L  VCTD A+RG+D   VDHVV+FDFP++  +Y
Sbjct:  268 VLDEADTMF-DRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGED-----------KLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLS-----ENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTL--VCTDLAARGLDL-DVDHVVMFDFPKNSIDY 455          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.475e-13
Identity = 72/259 (27.80%), Postives = 115/259 (44.40%), Query Frame = 3
Query:   30 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRI---MKKNRKAHPL 764
            +++  +LDE D +F D+ F   ++  ++     A        Q + VTAT+   +   + E F     +      +         +  SG +           NK  ALLQ++E S    +K +VFCN + + R V++ L      E ++  + +H  +  E R+ N+ +F   R++E     LVCTD A+RG+D   VDHV++FDFP +  +Y               K    V  K V+LA RI   MKKN     L
Sbjct:  261 DIKYLVLDEADTMF-DQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSE-----------NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLT-----ENQISTVNYHGEVPAEERVENLNKF---RNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDY-LHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAMKKNESLEAL 497          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.229e-12
Identity = 56/209 (26.79%), Postives = 93/209 (44.50%), Query Frame = 3
Query:   12 GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 638
            G L++ NL+  ILDE D + +   F+V +  +    P   Q    +AT+P EI +   +   D K ++         G+ +F V    D+            K   L+ L E   + + I++CN   T R+V+ + K+   +E        H  +DQ+ R   M++F +  S+     L+ TD  +RGID   V  V+ +D P  P  Y
Sbjct:  167 GYLRVDNLKLFILDEADEMLS-RGFKVQIHDIFKKLPQDVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEW-----------KMDTLIDLYETLTIVQAIIYCN---TRRRVDQLTKQM--RERDFTCSSMHGDMDQKDREVIMRQFRSGSSR----VLITTDLLARGIDVQQVSLVINYDLPVSPETY 354          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: RRP3_ENCCU (ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon cuniculi GN=RRP3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.575e-12
Identity = 62/202 (30.69%), Postives = 88/202 (43.56%), Query Frame = 3
Query:   33 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 638
            +R  +LDE D  F ++DF   L+++I S     Q L  TAT+  EI      +    K +     +   P L+E+ +              A   K SAL++L+E S     IVF +   T R +   L R       +     H  L QE R   M+ F  SR       LVCTD  SRG+D + VD V+ FD P+   +Y
Sbjct:  144 VRKFVLDEADRFF-EQDFVEDLETIIPSLREKRQTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLF------------VAMKWKNSALVELLEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEAL-----HGELSQEKREEAMRSFKESRFN----VLVCTDLGSRGLDISHVDLVINFDVPKSGKDY 323          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: DDX18_DICDI (Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum GN=ddx18 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 59/232 (25.43%), Postives = 96/232 (41.38%), Query Frame = 3
Query:   30 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR---ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQV 716
            NL+C I+DE D +  +  FE  +  +I   P T Q +  +AT   ++ +       +  V +G    R      GLE+  V C  ++         FL     L   ++K+   K IVF +     +    +L   D     + VL  H    Q+ R     EF  +        L+CTD A+RG+D   VD ++ +D P DP EY               +A +F++ K++
Sbjct:  266 NLKCLIIDEADRIL-EVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERR--------FL----LLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYID-----IPVLELHGRQKQQKRTNTFYEFVNAEKG----ILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKEL 475          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.741e-11
Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 3
Query:   15 ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 638
            IL+   ++  ILDE D + + E F+  +  + ++ P T Q + ++AT+P E+ +   +   D   ++         G+++F +D   +QES K            L  L E   VS+ ++FCN   T RKV+ + +     E    V   H   +Q  R   MK F T  S+     L+ TD  +RGID   V  V+ FD P +   Y
Sbjct:  159 ILKTDLIKMFILDEADEMLSRE-FKDPIYDIFTTLPETTQTVLLSATMPAEVLDITGKFMRDPVRILVKKDELTLEGIKQFYIDV--EQESYKF---------EVLCDLYETINVSQAVIFCN---TRRKVDYLTQALT--EADFTVSSMHGETEQSQRDVIMKAFRTGSSR----ILITTDLLARGIDVQQVSLVINFDLPSNRENY 345          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.741e-11
Identity = 53/208 (25.48%), Postives = 96/208 (46.15%), Query Frame = 3
Query:   15 ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 638
            I +  N++  ILDE D + +   F+  + ++ +  P T+Q + ++AT+P ++     +   D   ++         G+ ++ V+   +Q            K   L  L +   V++ ++FCN   T RKVE + +R   +E    V   ++ L Q+ R   MKEF +  S+     L+ TD  +RGID   V  V+ +D P +   Y
Sbjct:  159 IFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQY-----------KYDCLTDLYDSISVTQAVIFCN---TRRKVEELTERL--RENNFTVSAIYSDLQQQERDTIMKEFRSGSSR----ILISTDLLARGIDVQQVSLVINYDLPSNKENY 345          
BLAST of EY679673 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.804e-11
Identity = 70/217 (32.26%), Postives = 94/217 (43.32%), Query Frame = 3
Query:   24 LINLRCAILDEVDILFND------EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV------VMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 638
            L  +R  +LDE D L          D E  L +L  SS    Q L  TATL  E+        P  K       +       I P L++  +      +   T   AFL+    +L   E +     I+FCN  +T   +E +L+R        RV   H+ L Q  R AN+  F   R+  ARL LV TD ASRG+D   V+ VV FD PR+P +Y
Sbjct:  236 LKRVRMVVLDEADRLLAPGHGSMLPDVETCLSALPPSSE--RQTLLFTATLTPEVRALKSMPRPSTKPPIFVTEISTENNASIPPTLKQTYL------KVPMTHREAFLH----VLLSTEANASKPAIIFCNHTKTADLLERMLRRLSH-----RVTSLHSLLPQSERNANLARF---RASAARL-LVATDVASRGLDIPSVELVVNFDVPRNPDDY 431          
The following BLAST results are available for this feature:
BLAST of EY679673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RH50_ARATH8.563e-10773.26DEAD-box ATP-dependent RNA helicase 50 OS=Arabidop... [more]
RH50_ORYSJ2.857e-9464.31DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sa... [more]
RH39_ARATH4.988e-1428.85DEAD-box ATP-dependent RNA helicase 39 OS=Arabidop... [more]
RH39_ORYSJ2.475e-1327.80DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sa... [more]
IF4A_CRYPV1.229e-1226.79Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
RRP3_ENCCU3.575e-1230.69ATP-dependent rRNA helicase RRP3 OS=Encephalitozoo... [more]
DDX18_DICDI3.026e-1125.43Probable ATP-dependent RNA helicase ddx18 OS=Dicty... [more]
IF4A_YARLI6.741e-1128.37ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_KLULA6.741e-1125.48ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
DBP8_ASPNC8.804e-1132.26ATP-dependent RNA helicase dbp8 OS=Aspergillus nig... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-G06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679673 ID=EY679673; Name=EY679673; organism=Citrus sinensis; type=EST; length=1005bp
CCACGCGTCCGGGAATCTTGCAGCTGATAAATCTTAGATGTGCCATTTTG
GATGAAGTAGATATACTCTTTAATGATGAGGATTTTGAAGTAGCACTGCA
ATCTTTGATTAGTTCTTCACCTGTCACTGCACAATATCTATTTGTGACTG
CAACTTTACCTGTAGAAATATATAACAAGCTAGTTGAAGTTTTTCCAGAT
TGCAAAGTAGTCATGGGACCTGGCATGCACCGTATAAGCCCAGGTCTTGA
AGAGTTTCTCGTAGATTGCAGTGGAGATCAAGAATCAGATAAAACTCCAG
AAACAGCTTTTCTCAACAAGAAATCTGCTCTTCTGCAGCTGATTGAGAAA
AGTCCAGTTTCCAAGACGATTGTTTTCTGCAACAAGATTGAGACATGCAG
AAAAGTTGAGAATATATTGAAACGTTTTGATAGAAAAGAAACTCGTGTGC
GAGTTCTACCATTTCATGCTGCTCTTGACCAAGAGACAAGGCTTGCAAAT
ATGAAGGAGTTCACTACTTCACGTTCGAAAGAAGCACGTTTGTTTCTAGT
CTGCACTGATAGAGCATCTCGTGGAATTGATTTTGCGGGTGTGGATCATG
TTGTACTCTTTGACTTTCCACGTGATCCTAGTGAATATGTGCGCCGTGTT
GGAAGAACTGCCAGAGGTGCTGGAGGAACAGGCAAAGCATTCATATTTGT
TGTCGGCAAGCAAGTTTCTCTCGCCCAAAGGATAATGAAAAAAAATCGTA
AGGCCCATCCATTGCACAATGTGCCATCCGCTTTTTGAACTAATGCGTTT
GAAAAAAAAACCCACTGGGGGAGGTAAAAAAAAAATGGCTAATCCCTGCC
TGCCCCCATCCAACAAGTGTGGAATAAAAAAAATTAAAAAAAAAAAACCT
GAATTTAAAAGGAATGGGGCGGGGAAAGGGTTTGAAGGGGGGAAAAAGGA
ACATGTAAAAATTTTGGCCGGAAAGGGAAAAACAAAACAAATTTCTAACA
AAACA
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