EY679665

Overview
NameEY679665
Unique NameEY679665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1006
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.690e-12
Identity = 60/193 (31.09%), Postives = 84/193 (43.52%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGG-NGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGS 583
            GFGF+T+D  + VD+++ + +H +NG   EV++A+ ++       S      NFGF              +    G FG    S F      RGG   +G G G+G G N  GG  P   G  NF  S GYG   G + GG     +   G+ GG +  G     S ++N +GN     S   P   G F GS
Sbjct:  154 GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGD------------SRGGGGNFGPGPGSNF------RGGSDGYGSGRGFGDGYNGYGG-GP---GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGGS 324          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.125e-12
Identity = 60/193 (31.09%), Postives = 83/193 (43.01%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGG-NGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGS 583
            GFGF+T+D  + VD+++ + +H +NG   EV++A+ ++       S      NFGF              +    G FG    S F      RGG   +G G G+G G N  GG  P   G  NF  S GYG   G + GG     +   G+ GG +  G     S  +N +GN     S   P   G F GS
Sbjct:  142 GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGD------------SRGGGGNFGPGPGSNF------RGGSDGYGSGRGFGDGYNGYGG-GP---GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGS 312          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.125e-12
Identity = 60/193 (31.09%), Postives = 83/193 (43.01%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGG-NGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGS 583
            GFGF+T+D  + VD+++ + +H +NG   EV++A+ ++       S      NFGF              +    G FG    S F      RGG   +G G G+G G N  GG  P   G  NF  S GYG   G + GG     +   G+ GG +  G     S  +N +GN     S   P   G F GS
Sbjct:  154 GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGD------------SRGGGGNFGPGPGSNF------RGGSDGYGSGRGFGDGYNGYGG-GP---GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGS 324          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.125e-12
Identity = 60/193 (31.09%), Postives = 83/193 (43.01%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGG-NGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGS 583
            GFGF+T+D  + VD+++ + +H +NG   EV++A+ ++       S      NFGF              +    G FG    S F      RGG   +G G G+G G N  GG  P   G  NF  S GYG   G + GG     +   G+ GG +  G     S  +N +GN     S   P   G F GS
Sbjct:  142 GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGD------------SRGGGGNFGPGPGSNF------RGGSDGYGSGRGFGDGYNGYGG-GP---GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGS 312          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 72.0182 bits (175), Expect = 6.125e-12
Identity = 60/201 (29.85%), Postives = 91/201 (45.27%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGV-GMNLDGGL---SPSYGGSSN--FSNSLGYGRMLGPFPG-GNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLG 580
            GF F+T+D  ++VD+++ + +H +NG   EV++A+ K+   S   S+    G  NFG  R       ++F +  N S  GGFG            G  G   +GG+G G  G   DGG     P Y G S    S   GYG     + G G+ + ++   G   G G G +     ++N +GN  + +S   P   G F G
Sbjct:  147 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG------------GSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG 335          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.000e-12
Identity = 60/193 (31.09%), Postives = 82/193 (42.49%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGG-NGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGS 583
            GFGF+T+D  + VD++  + +H +NG   EV++A+ ++       S      NFGF              +    G FG    S F      RGG   +G G G+G G N  GG  P   G  NF  S GYG   G + GG     +   G+ GG +  G     S  +N +GN     S   P   G F GS
Sbjct:  154 GFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGD------------SRGGGGNFGPGPGSNF------RGGSDGYGSGRGFGDGYNGYGG-GP---GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGS 324          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 60/193 (31.09%), Postives = 82/193 (42.49%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGG-NGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGS 583
            GFGF+T+D  + VD+++ +  H +NG   EV++A+ ++       S      NFGF              +    G FG    S F      RGG   +G G G+G G N  GG  P   G  NF  S GYG   G + GG     +   G+ GG +  G     S  +N +GN     S   P   G F GS
Sbjct:  154 GFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGD------------SRGGGGNFGPGPGSNF------RGGSDGYGSGRGFGDGYNGYGG-GP---GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGS 324          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.328e-11
Identity = 61/200 (30.50%), Postives = 86/200 (43.00%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE--FSPGPSRSSMIGYNNFGFNRPTNL---LNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGF----SGGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLG 580
            GF F+T+D  + VD+++ + +H +NG   EVK+A+ K+   S G  R    G  NF   R  N      +F +  N    GG+G            G GG + FGG         DGG   +YGG   +S+  GYG   GP  G     +    G+     GGN  G +      +N +GN  G   S   P   G+F G
Sbjct:  168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGG---------DGG---NYGGGPGYSSRGGYGGG-GPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG 353          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.328e-11
Identity = 61/201 (30.35%), Postives = 84/201 (41.79%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGY---GVGMNLDGGLSPSYG-----GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLG 580
            GF F+T+D  + VD+++ + +H +NG   EVK+A+ K+   +    R    G +NF   R  N        +     GGFG R          G GG    GG GY   G G N  GG   +YG     G   +  S GYG   G + GG         G+ G N  G+       +N +GN  G   S   P   G+F G
Sbjct:  160 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQTASAQRGRGGGGSNF-MGRGGNYGGGDGGNFGRGGGGGFGNR---------GGYGGGGGRGGGGYGGGGDGYNGFGGDGGNYGGGPGYGGRGYGGSPGYGNQGGGYGGGGG-------GYDGYNESGN--FGGGNYNDFGNYGGQQQSNYGPMKGGSFSG 341          
BLAST of EY679665 vs. ExPASy Swiss-Prot
Match: RO21_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.772e-11
Identity = 55/195 (28.21%), Postives = 80/195 (41.03%), Query Frame = 2
Query:   14 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGG--SSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSAT-NPASPGAFLGSGK 589
            GF F+T+D  + VD+++ + +H +NG   EV++A+ K+       +      NFGF             +   P G F    D        G  G + +GG G G G N  GG  PSYGG     +    GYG   G + GG  N       + GGN  G        +N +GN +  S+   P   G   G  +
Sbjct:  142 GFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGNFGFGDSRG-----GGNFGSGPGGNFRGGSDGYGGGRGYGDNGYNGYGG-GQG-GGNYGGG--PSYGGGRGGGYGGGAGYGNQGGGYGGGYDN-------YGGGNYGGGG-----NYNDFGNYNQQSSNYGPMKSGGNFGGNR 315          
The following BLAST results are available for this feature:
BLAST of EY679665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ROA2_MOUSE4.690e-1231.09Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_SAGOE6.125e-1231.09Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_HUMAN6.125e-1231.09Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_BOVIN6.125e-1231.09Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA1_HUMAN6.125e-1229.85Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA2_RAT8.000e-1231.09Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_PONAB1.782e-1131.09Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA3_HUMAN2.328e-1130.50Heterogeneous nuclear ribonucleoprotein A3 OS=Homo... [more]
RO31_XENLA2.328e-1130.35Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
RO21_XENLA6.772e-1128.21Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679665 ID=EY679665; Name=EY679665; organism=Citrus sinensis; type=EST; length=1006bp
CCACGCGTCCGGAGGTTTTGGCTTCATCACTTATGATTCTGAGGAAGCAG
TGGACAGAGTTTTACATAAAACATTTCATGAACTCAATGGTAAAATGGTT
GAGGTCAAGAGGGCAGTGCCAAAAGAGTTCTCTCCAGGGCCCAGCCGTAG
CTCAATGATAGGTTATAATAACTTTGGTTTTAATAGACCCACCAACCTCC
TTAATAGTTTTGCTCAGAGATACAATTTGAGCCCTGCTGGAGGTTTTGGA
GTTAGAATGGATAGCAGGTTTAGCCCTCTTGCTACTGGTCGGGGTGGCAT
TTCTCCATTTGGTGGTGCTGGTTATGGAGTAGGTATGAATCTGGATGGGG
GGTTGAGCCCAAGCTATGGTGGGAGTTCCAACTTCAGCAACAGTCTAGGA
TATGGGCGAATGCTGGGTCCTTTTCCTGGTGGGAATTCAAACAGGTTTAG
CACTCCTGTTGGCTTCAGTGGGGGAAATGGAAGAGGCGATTCTGTTTTGA
GCTCAACAACTTGGAATGTCTGGGGAAATGGGAGCCTTAATAGTGCCACA
AATCCTGCCAGCCCCGGTGCTTTCTTGGGCTCTGGAAAGTGGGAACTTTG
AAATTTTCATTTGGAAATAATAATGTGAATTGGGGGTCCTGTTTCGGCTC
CAGGAAGAGGGAAATGCTTCTGGCTATAATTGCTGGAAACCAGGGGTTTA
TGGGGAGTGGGTGAAGGGCAACTATTGGGGCTTTGGAAGGGGGAAGGATT
TGGAAGAACCCATTAAAGGGCGGGGTACGCCCCAACATCCTCATTTGCTG
GGGCAAACCCTGGGGTTTTAAGGGGGCCTAATGGGGGACCCCTTACACGA
AAGGGAATCAAGGGTAGGGGTGGATTCCCACCTTGGGCGTTTCTCCCCCC
CCCCCAAAACCTGGAGGGGGTCCCGGGGTCATATTTATATTTACCGGGGC
GCTGGGGAAAGCGGGGCCCCCCAGACAAGGTGGTCCCCAACCAAAAGTTA
TTCCGG
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