EY679642

Overview
NameEY679642
Unique NameEY679642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8618 contig Csv1_Contig8618:1..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY679642 vs. ExPASy Swiss-Prot
Match: BIOB_ARATH (Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.373e-23
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    7 SAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPSFHEDEANVSKAESCQEAVSSS 234
            SAGR+R SM EQALCFLAGANSIFTGEKLLTTPNN+F ADQLMFK LGL PK PSF ED+   S++E+C++  S+S
Sbjct:  305 SAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDD---SESENCEKVASAS 377
[Close]
BLAST of EY679642 vs. ExPASy Swiss-Prot
Match: BIOB_CYTH3 (Biotin synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=bioB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    7 SAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPSFHEDEANVSKAESCQEAV 225
            SAGR+R +  EQALCFLAGANSIF G+KLLTTPN    AD+ MF+VL L P+  SF   +A   K E    A+
Sbjct:  264 SAGRVRMNTEEQALCFLAGANSIFAGDKLLTTPNPEVNADKEMFQVLNLKPR-QSFKNGDAPKIKFEQIPSAL 335
The following BLAST results are available for this feature:
BLAST of EY679642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BIOB_ARATH1.373e-2372.37Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE... [more]
BIOB_CYTH38.347e-1356.16Biotin synthase OS=Cytophaga hutchinsonii (strain ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-D10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679642 ID=EY679642; Name=EY679642; organism=Citrus sinensis; type=EST; length=674bp
CACGCGTCCGCTGGAAGAATTCGTTCTTCCATGCCAGAGCAGGCACTGTG
TTTTCTTGCCGGTGCTAATTCCATCTTTACTGGCGAGAAACTTTTGACAA
CTCCGAACAACAATTTCGTTGCTGATCAACTCATGTTCAAGGTTCTTGGA
CTCACTCCTAAAGCTCCCAGTTTTCATGAAGACGAAGCAAATGTTTCCAA
AGCAGAGAGTTGTCAGGAAGCTGTTTCCTCTTCAGGTTGAGACTTTACCA
TTTGCACGGTGGTGCCTACTTCCAAGGAAATTGTGAGTCCACAACATCAT
AGACTGCTGCATAGTTTGGTGTTAATTTTGATGCACATTGCTCCAGGAAA
TCGTGAGTCCACAACATCATTGACTGCTGCTGCAGGAGGCACCGATGAGG
AGAGGATGCCCAGTACTACTACTGCTAACAAGCAAACGAGCATTCATCTT
GAACGATTGAATAATCTTGATGCCTGCCAGATTGCTTGATTGTATGTGTT
TTATCTCAAAGAGGGCTCATTATAGACGAGAAATTAACGTAATTAAGAAT
TCAAAACGGCCTTGTCCTGGTAGATATTGTATTTTAACCTCATTTAATTG
GATTTAAACAGATTAAATTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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