EY679593

Overview
NameEY679593
Unique NameEY679593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679593 vs. ExPASy Swiss-Prot
Match: PRH_ARATH (Pathogenesis-related homeodomain protein OS=Arabidopsis thaliana GN=PRH PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.258e-19
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1 
Query:  223 QKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVESARQVSGSPRISKESS--LETEKKNADVLTLKNSLEETLICSPKSLKKIHPKRDSKSVN----SGSGFEKNQQKRASLESPVNSNQARIELSD 633
            +KLRQVFAE ELPS+ V++ L+KELSL+PEKVNKWFKN RY+AL+ RK ES +Q   S  +S   S      + N +   ++++L++T          + P  D+ + N      +  E+ QQ+  S  SP + +Q  +E +D
Sbjct:  466 EKLRQVFAETELPSKAVRDRLAKELSLDPEKVNKWFKNTRYMALRNRKTESVKQPGDSKTVSGGDSGPEAVMENNTETNEVQDTLDDT----------VPPGFDATNQNILSPCNNNQEEFQQENVSFPSPTDESQQYLEQND 598
The following BLAST results are available for this feature:
BLAST of EY679593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRH_ARATH8.258e-1939.16Pathogenesis-related homeodomain protein OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-H08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679593 ID=EY679593; Name=EY679593; organism=Citrus sinensis; type=EST; length=963bp
TGACTCTGTATGGAAGTGAGGACAAATATTCCAAAGTTAAAACTGCAGAA
GTAAAAAAGAAGCTTCCTTCAAATGCAAAAATTAGAAGGTCATTTCACAG
AATGCCACCTAATGCAGTAGAGGTAGTATGAAATTTGATTCTTTAGACAG
TGAGCAGTTTATAATCTTAATTATCTGGAAGTTTATTACCATGCTTATTT
GTCTTTCCTCTTATCGCTGCACCAGAAGCTTCGTCAAGTGTTTGCTGAGA
ATGAACTTCCCTCTAGAATTGTCAAGGAAAATCTGTCGAAAGAGTTGAGT
CTTGAACCTGAGAAGGTTAACAAATGGTTTAAAAATGCAAGGTACTTAGC
ACTGAAAGCCAGAAAGGTGGAGAGTGCACGACAGGTTTCTGGTTCTCCTA
GGATCTCCAAGGAATCTAGTCTGGAAACTGAGAAGAAAAATGCAGATGTT
TTGACATTGAAGAATTCCTTGGAAGAAACTCTGATATGCAGCCCAAAGAG
TTTGAAAAAGATTCACCCCAAAAGGGATTCAAAATCAGTCAACAGTGGCA
GCGGCTTCGAGAAAAATCAGCAGAAAAGAGCTTCCCTAGAATCACCTGTA
AATAGCAATCAGGCCAGAATTGAGTTGAGTGATGAATGTGAGCTTTAAGA
AGCTTCTTAAAGCAAAAATCAAAAAAGAAAAAAAAGGTCAAATTTGGTGC
CCCAGGGGAAATCACAAAGCTGGTGAAACCAAAAATGGGAAAAACCTGTC
GGGGCCAGGGTAAACTGGAAGGTTTGAAGCCAAATTTTATCCAAAATTTC
AATTTGAAAAATAGTAAAAAGGTCAAAATAAAAAGTCCTTTTTTATTGGA
AATGGGGTCTATTGTCCCCAAAAACAAAAATTAAGGGGAAAAAAATTTTG
GAAATTTTTTTCACCTCCCCCATTTTTTTTTTCCAAAAGCTTTTTTTTCC
CCCAAAAGGTTTT
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