EY679590

Overview
NameEY679590
Unique NameEY679590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length979
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679590 vs. ExPASy Swiss-Prot
Match: Y1689_ARATH (Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.351e-27
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 2 
Query:  215 PLSGLTLFIIGPFLDGLLTSKNVFAFKYTPYVLFFIVLSCLISVSVNFNTFLVXXXXXXXXXXXXXXXVKTCIGSSILAMFFFMIQ--FSWGQLFG 496
            P   +TLF+ GPFLDGLLT++NVFAFKYT  V+FFIVLSCLISVSVNF+TFLV               +KTC+   +LA  + +++  F W  + G
Sbjct:  191 PYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTFLV-IGKTSPVTYQVLGHLKTCL---VLAFGYVLLRDPFDWRNILG 282

HSP 2 Score: 54.299 bits (129), Expect = 2.351e-27
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 3 
Query:  153 MTNTIQKKFKVSSTQLLYQSCPYQA 227
            MTNTIQKKFKVSSTQLLYQSCPYQA
Sbjct:  170 MTNTIQKKFKVSSTQLLYQSCPYQA 194
The following BLAST results are available for this feature:
BLAST of EY679590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1689_ARATH2.351e-2751.04Uncharacterized membrane protein At1g06890 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-H05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679590 ID=EY679590; Name=EY679590; organism=Citrus sinensis; type=EST; length=979bp
CTCAGCTAAAGTTAGCTTTGCCCCTTTTTTCCTGTTTTGTGCCTTCTACT
TGTTATTTCCAAATCTTTTATTAACTTTGATCCAGTGGGACCAGATGTTC
TCTCATGGCCAGAATTCCTTTGCAAATATAAGCCTTAACCAGTTACTCTC
AGATGACCAATACCATCCAGAAGAAGTTCAAAGTTTCTTCAACCCAACTG
CTGTATCAGTCGTGCCCCTATCAGGCTTAACTTTGTTCATCATTGGCCCA
TTTCTAGATGGGCTTTTGACAAGCAAAAATGTTTTTGCATTCAAATACAC
CCCTTACGTGCTGTTCTTCATTGTACTATCGTGCTTGATATCTGTTTCTG
TAAACTTCAACACGTTTTTGGTAATTGGGAAAGACATCTCCAGTTCACAT
ATCAAGTCCTAGGACATCGTGAAAACATGCATTGGTTCTAGCATTTTGGC
TATGTTCTTCTTCATGATCCAATTCAGCTGGGGGCAACTTTTTGGGTAAC
CCTGATTGACGTAATTGGGGATGGGAACTTTATTCGAAATTGTTGGCCGT
CATGGAGAAACCCACGTAAAGGGCTATGGAAATCATCAATCTAAAATTGC
CCCCAAGGTGGAAGGGAAGGGGGAAACCTGAACCTTTTTAATCTACTGCA
AAAAAAAAACGGTACCGGGCAGAGAGGGTCTTTGGCCAAAGGTGTTCCAG
GGGGGGGAATTTTCAAGCAGAGGGGACCACGAATAGGCCTTGGAATGTCT
TGAGCCACGTAAGTTTAGTGCACATTCTCGTTTTTATATGGAATTAATAA
ATTCCCGTGTCAATCTCCTAGTTCAAAAAACTGAAATTTGAAAAAAATGG
GTCTGGCATGTAGATTAAACAATAAAAGTAACACCCCAAGGAGAAAAAAA
TATAATATATAATAAATACACAAGTAGGATAAAAAATTAGTCGAAGGACT
AGTGTGCTTTTCGGAGGTCAGTCAGGAAA
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