EY679577

Overview
NameEY679577
Unique NameEY679577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length980
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679577 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.670e-12
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 2 
Query:  302 LKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP-PDMQCKDKFLLQSTIVPSNTDVDDLPPDTFN------KDNGKTIEECKLKVVYVSPTSAQGNLKE 631
            + V N     V FKVKTT+PK Y VRPN+G ++P  +  ++V LQA +E P PD +C+DKFL+QS  +    D D    + ++      +  G++I + K++ VY +    Q   K+
Sbjct:   23 ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAI---GDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPPQSADKQ 136
[Close]
BLAST of EY679577 vs. ExPASy Swiss-Prot
Match: YDFC_SCHPO (Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe GN=SPAC17C9.12 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.480e-11
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:  296 CDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQ-AQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDNGKTIEECKLKVVY 595
            CDL++ N   + + FKVKTT+PK+Y VRPN G ++   +  + V LQ    E  P  +C+DKFL+QST +       D+  D + + +   I E K++ VY
Sbjct:   21 CDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDI-ADIWTQVSKANISERKIRCVY 120
The following BLAST results are available for this feature:
BLAST of EY679577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YH75_SCHPO7.670e-1235.90Vesicle-associated membrane protein-associated pro... [more]
YDFC_SCHPO8.480e-1137.62Uncharacterized protein C17C9.12 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-G04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679577 ID=EY679577; Name=EY679577; organism=Citrus sinensis; type=EST; length=980bp
TTTTTTTTTTGTCATTTTTTACCCTTATATTGTTCTTCTATTTTGCTCGA
TGGATTAGGAAGGTTGAGATTGTGGACTTAGGGTTTGCTTCTTTGTTTTG
TTCGTTCCTTGTGTCCTGTTATGTGCTTTTAGTGTGTGGCGGATTGTGAT
TGATTGCGTGATCGTTGATTTGTGAGGGCTTAGATAATTGATCGCGAAGT
GGGGCCTAGTCATGACTGCTGATGGCGGTAATCAGTTGATCTCTGTTCAT
CCCGAAGAACTCAAGTTCATTTTTGAGCTAGAAAAACAAGGCTTTTGTGA
TCTTAAAGTTATAAACAATACAGAACATCATGTTGCTTTCAAGGTCAAAA
CCACTTCACCTAAGAAGTACTTCGTAAGACCCAACACTGGTGTGGTGCAA
CCTTGGGATTCGTGTATCATTAGAGTGACTCTTCAAGCTCAACGAGAATC
TCCTCCAGATATGCAATGCAAAGACAAGTTTCTCTTGCAGAGTACCATAG
TGCCTTCAAATACCGATGTTGATGATCTTCCTCCAGATACTTTTAACAAG
GATAATGGGAAGACAATAGAGGAATGCAAGCTTAAAGTTGTGTATGTCTC
TCCTACCTCAGCTCAGGGAAATTTAAAAGAATGAGGATTAGTGGATGGCC
TCCCTTATTCCTGAATGCCAATTCCGCTTTACCGCGCCTGGAAGGAAAAA
AGGGATGCCTGCTGTTCCGGCAAAACACGCCTTCTCGCAACAAGGTTTGG
GACCTTGCTTAAAAAAAACAAAGTCAAAGGAAAAGGGGGTTCCTGGGCTT
TCCTCCCTTCTTGTTTGGCCCCCTTTTGTGGGGAAACTCATTGGGGAAAC
CCTGGGGGTCGGGCCCCAATTTCTTTGAACCTTTTTTTAATGGGTTTCTT
CCCCCCCCCCCTCCCCCTTGGGTTTTCCCCCCACAAAATTGGGTTATTTA
CACCACCCCCTTTTTTTTCTCACCAATTTC
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