EY679574

Overview
NameEY679574
Unique NameEY679574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679574 vs. ExPASy Swiss-Prot
Match: RFAP_ECOLI (Lipopolysaccharide core heptose(I) kinase rfaP OS=Escherichia coli (strain K12) GN=rfaP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.661e-12
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  137 LAEPFFTLWAGRDAFAEL*KLDGQVYRGLGARRTLRTVVDGHGFFV*INRGIGWAEILKNLISAMLPVIG 346
            L EP  TLW G+DAFAE+ KL+G+V+R L  RRTLR  + G  +F+  ++G    EI+KNL+S  +PV+G
Sbjct:    4 LKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLG 73          

HSP 2 Score: 21.9422 bits (45), Expect = 1.661e-12
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 1
Query:  370 IHRVLEVGVPTHDGPSLTAKGV 435
            IHR+ +VGV T  G     KG+
Sbjct:   81 IHRLSDVGVDTMKGIGFGEKGL 102          
BLAST of EY679574 vs. ExPASy Swiss-Prot
Match: RFAP_SALTY (Lipopolysaccharide core heptose(I) kinase rfaP OS=Salmonella typhimurium GN=rfaP PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.967e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  137 LAEPFFTLWAGRDAFAEL*KLDGQVYRGLGARRTLRTVVDGHGFFV*INRGIGWAEILKNLISAMLPVIG 346
            L  P  TLW G+DAF E+  L G+V+R L  RRTLR  +DG  +F+  ++G    EI+KNLIS  +PV+G
Sbjct:    4 LKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDGKSYFLKWHKGTSLKEIVKNLISLRMPVLG 73          

HSP 2 Score: 23.0978 bits (48), Expect = 7.967e-12
Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = 1
Query:  370 IHRVLEVGVPTHDGPSLTAKGV 435
            IHR+ E+GV T  G     KGV
Sbjct:   81 IHRLHELGVDTMHGVGFGEKGV 102          
BLAST of EY679574 vs. ExPASy Swiss-Prot
Match: RFAP_ECOLX (Lipopolysaccharide core heptose(I) kinase rfaP OS=Escherichia coli GN=rfaP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.264e-11
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  137 LAEPFFTLWAGRDAFAEL*KLDGQVYRGLGARRTLRTVVDGHGFFV*INRGIGWAEILKNLISAMLPVIG 346
            L EPF TLW G+D F E+  L G+V+R L  RRTLR  + G  +F+  +RG    EI+KNL+S  +PV+G
Sbjct:    4 LKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEIIKNLLSLRMPVLG 73          

HSP 2 Score: 21.9422 bits (45), Expect = 2.264e-11
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  370 IHRVLEVGVPTHDGPSLTAKGV 435
            IHR+ +VGV T  G +   KG+
Sbjct:   81 IHRLRDVGVDTMYGVAFGEKGM 102          
The following BLAST results are available for this feature:
BLAST of EY679574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RFAP_ECOLI1.661e-1250.00Lipopolysaccharide core heptose(I) kinase rfaP OS=... [more]
RFAP_SALTY7.967e-1248.57Lipopolysaccharide core heptose(I) kinase rfaP OS=... [more]
RFAP_ECOLX2.264e-1148.57Lipopolysaccharide core heptose(I) kinase rfaP OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-G01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679574 ID=EY679574; Name=EY679574; organism=Citrus sinensis; type=EST; length=900bp
ACTGCTCGACTATCCACGAGCGCGCGCGGCCTGCCCTTTTTAATGGTCTG
GCCTTCGCTGACACGGCCGACCTCTCTTTTTTGCCGCAATACGCTGCGGA
CCTGATTCTGGCGGAGCCTAACCGATGAAGTTGATTCTTGCCGAACCGTT
CTTTACCCTGTGGGCCGGACGCGATGCGTTCGCCGAACTCTAGAAGCTGG
ACGGGCAGGTGTACCGTGGACTGGGCGCCCGCCGTACCTTGCGGACTGTA
GTGGACGGCCACGGCTTTTTCGTGTAAATCAACCGGGGGATCGGCTGGGC
CGAAATCCTCAAGAACCTGATCTCCGCCATGTTACCGGTGATTGGGCGCG
GGTCACTAATGGCTGGCGAATCCACCGTGTGCTGGAAGTGGGCGTACCGA
CCCATGACGGTCCGTCGCTTACAGCGAAGGGGGTCGCAGCCCGGGTGGAA
TAACTACTCTTTCTTTGTCACCGTAAGATGTGGCACCGAACCCGTGTCTC
GTAATTACTGATCCATGGTTCCGTGTTTGAGTCTCCGCCCAGATCCAGTG
ATCGAAGCATGTACCAGCATCTGCGAAATTGGATAGTATGATCAGATATG
ACTCGTCTGCGATGGGTGTTTATTCCGCTGTGTACTGGTTCTTATTGCCA
TTTTCTGGGTTACCACCGTAACAAGCTACTAGGACACCATAGACTGCTAC
GCTGACCTAAGTATGTAACTACACATATTGTCCGTATTTATTATATGAAT
ACTCTTTTGATAACTGGATAAAACTATGAAGGCTGGAAATCTTTTGGCTT
TCTCACGGATACAGGGAGACTATGGGGTGTACGTTTCCTGAGTATGTCAT
TGTGTTTCTCTTCATTGGAATGATGATCATACAAATACCAAGTACGACCC
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