EY744707

Overview
NameEY744707
Unique NameEY744707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744707_ssr439 microsatellite EY744707_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744707 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.633e-20
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 3
Query:  201 SHPLYEQLLSAHVACLRVDTSVDQLPRIDAQLA*SQHDVSKYTALG-AGQGWVTDDQEL-----HYV 383
            SHPLYEQLLSAHVACLR+ T VDQLPRIDAQLA SQH V+KY+ALG A QG V DD+EL     HYV
Sbjct:  165 SHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQGLVGDDKELDQFMTHYV 231          

HSP 2 Score: 28.8758 bits (63), Expect = 4.633e-20
Identity = 16/35 (45.71%), Postives = 20/35 (57.14%), Query Frame = 2
Query:   95 MNKANTNNKREGVVVESGADRAVNWQNARCEAEIL 199
            M      NK +G    + AD  V+WQNAR +AEIL
Sbjct:  131 MKTGGGENKNDGGGA-TAADGVVSWQNARHKAEIL 164          
BLAST of EY744707 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.793e-19
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  201 SHPLYEQLLSAHVACLRVDTSVDQLPRIDAQLA*SQHDVSKYTALGAGQGWVTDDQEL 374
            +HPLYE LLSAHVACLR+ T VDQLPRIDAQLA SQ+ V+KY+AL  G G V DD+EL
Sbjct:  173 AHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAL--GNGMVGDDKEL 228          

HSP 2 Score: 36.5798 bits (83), Expect = 3.793e-19
Identity = 27/62 (43.55%), Postives = 34/62 (54.84%), Query Frame = 2
Query:   17 EDVTPTNNSIIAAVESADLKNTTSQNMNKANTNNKREGVVVESGADRAV-NWQNARCEAEIL 199
            +DVT   +S+IAA  S D     S ++   +  NK EG     G D  V NWQNAR +AEIL
Sbjct:  120 DDVTVAGDSMIAAALSHD-----SADLKPDSILNKNEG----GGGDGGVMNWQNARHKAEIL 172          
BLAST of EY744707 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  171 RMRGARRK--YYSHPLYEQLLSAHVACLRVDTSVDQLPRIDAQLA*SQHDVSKYTALGAGQGWVT-DDQEL-HYVFYFHKVIIDFK 416
            R + AR K    SHPLYEQLLSAHVACLR+ T VDQLPRIDAQLA SQ+ V+KY+ L A QG +  DD+EL H++ ++  ++  FK
Sbjct:  117 RWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQGLLAGDDKELDHFMTHYVLLLCSFK 202          
BLAST of EY744707 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.792e-15
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 3
Query:  201 SHPLYEQLLSAHVACLRVDTSVDQLPRIDAQLA*SQHDVSKYTALGAGQGWVTDDQELHYVFYFHKVIIDFK 416
            +HPLY+QLLSAHV+CLR+ T VDQLPRIDAQLA SQ+ V+KY+ LG GQ  + D     ++ ++  ++  FK
Sbjct:  169 NHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQPPLDDKDLDQFMTHYVLLLSSFK 240          

HSP 2 Score: 24.2534 bits (51), Expect = 4.792e-15
Identity = 11/42 (26.19%), Postives = 19/42 (45.24%), Query Frame = 2
Query:   74 KNTTSQNMNKANTNNKREGVVVESGADRAVNWQNARCEAEIL 199
            +   + N N  N NN+ E            +W+  +C+A+IL
Sbjct:  138 EENNNNNNNNNNNNNEEEN-----------SWEREKCKADIL 168          
BLAST of EY744707 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  201 SHPLYEQLLSAHVACLRVDTSVDQLPRIDAQLA*SQHDVSKYTALGAG----QGWVTDDQELHYV 383
            +HPLYEQLLSAHVACLR+ T VDQLPRIDAQLA SQ  V+KY+AL A      G   D    HYV
Sbjct:  114 AHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDDGRELDQFMTHYV 178          
BLAST of EY744707 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.887e-11
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  204 HPLYEQLLSAHVACLRVDTSVDQLPRIDAQLA*SQHDVSKYTALGAGQGWVTDDQEL-HYVFYFHKVIIDFK 416
            HP+YEQLL+AHVACLRV T VDQ+PRIDAQL+      +KY+ LG     V D++EL H++ ++  ++  FK
Sbjct:  125 HPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTLGV----VVDNKELDHFMSHYVVLLCSFK 192          
The following BLAST results are available for this feature:
BLAST of EY744707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KNAT3_ARATH4.633e-2074.63Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNAP3_MALDO3.793e-1972.41Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT4_ARATH1.142e-1658.14Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
LET12_SOLLC4.792e-1554.17Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
KNOSD_ORYSJ4.492e-1364.62Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNAT5_ARATH1.887e-1151.39Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-010-F03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744707 ID=EY744707; Name=EY744707; organism=Citrus sinensis; type=EST; length=878bp
TCCGCGCCCACTCATCGAAGACGTCACTCCTACCAACAACTCCATCATCG
CCGCCGTCGAATCCGCCGATTTGAAGAACACCACCAGTCAGAACATGAAC
AAGGCCAATACTAATAACAAGCGCGAAGGAGTGGTGGTTGAGAGCGGCGC
TGACAGAGCTGTGAATTGGCAGAATGCGAGGTGCGAGGCGGAAATATTAT
TCGCATCCGTTGTACGAGCAGCTACTCTCAGCACACGTGGCTTGCTTGAG
GGTCGACACGTCGGTGGATCAGCTGCCGAGGATTGATGCTCAGCTTGCTT
AGTCGCAGCACGACGTCTCTAAGTACACCGCTTTAGGTGCCGGTCAAGGC
TGGGTTACTGATGACCAAGAGCTCCACTATGTATTCTACTTTCATAAAGT
TATCATTGATTTTAAATTTAATTTCTTTTCCATTTTGTTTGCTTGCTTGC
TTTCTTGTCTTATTAGAACCTTGAATTTTAAATTCACAGAAGAATTTATT
GCGAAAAAAAACAACACACAACACAAGAACAAGACGCGAAACGAAGAAGG
GGGCGGCCCCCTCTAGAAGGACCCACGTTTACACACCGTTGCTTGCAAAG
ATATAATTCTTCTATAGGGGTCACCCAAACTTCAATTCCCCCTGGGCCCC
TGTTCTAAACCGCTCGCATTGGAAACCCCCGGGGGAACCACAAACTAATA
CCTTTCGCAACATTCCCCCCTTTACCCCCTGGGGAACAATAACCAAAAAG
GTCCGCCCCGCATTCCCCTCTCCCCCCAAAACGCCACGCCCCTAAACAGG
GAACAGGGCGACCTCTCATTTACACGGCAAACTTTAACACCCCGACGGGC
GAGGCGCGGGGCACCCCCCCCCTGCGCC
back to top