EY679517

Overview
NameEY679517
Unique NameEY679517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679517 vs. ExPASy Swiss-Prot
Match: DNAJ8_ARATH (Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.940e-31
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 2 
Query:  281 RVKVICXXXXXXXXXXVMDPYKTLRIQPGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPFRGMNDPDWDLWEE*MGWQGVGIKE 640
            R KV+C          VMDPYKTL+I+P +SE EVKKAFRQLA +YHPDVCRG+NCGVQF  INEAYD+V+   + +    E  ++P+D   DE   GMNDPD D WEE MGW+G G ++
Sbjct:   42 RSKVVCSSSSS-----VMDPYKTLKIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQMEGTE-EFEPFD-VYDEGLNGMNDPDCDTWEEWMGWEGAGTRD 154
The following BLAST results are available for this feature:
BLAST of EY679517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNAJ8_ARATH4.940e-3155.83Chaperone protein dnaJ 8, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679517 ID=EY679517; Name=EY679517; organism=Citrus sinensis; type=EST; length=895bp
CCATTATTTATTATTAGCCAATCTAAATTCATCGTCATTGAATCTCATCT
ATCCAAAAAAGAAAAAAAAAAAATCAAATTTTGCTTGTGGGATCTTTTGC
TTTCAACATATAAAGAAAGAAAGAAAGAAAGATTAAAGCTTGTTGCTTGC
GGCTTTGTGAGTTTTTGATTTGAGAAAAATGGCAAGTGTTGCGGGGACGA
TCGGAGCAAATGGGTCGTCGGGTTCATCATCTTCATGGACTCAGCTGAAG
AATATGAAGAAGAAGAAAATGATGATGGGCAGAGTCAAGGTCATTTGCTC
TGCTTCTTATTCATCTTCATCGTCTTCTGTTATGGATCCGTACAAGACTC
TCAGGATTCAGCCTGGTGCCTCTGAATCTGAGGTCAAGAAAGCCTTTAGG
CAGCTTGCTTTGCAGTATCATCCGGATGTATGCAGAGGAAACAATTGTGG
AGTTCAGTTTCATCTGATTAATGAAGCTTATGATATGGTGATGAATAATT
TCAGGGAGGAACCCAATGAACCGGAGATTATGTACCAGCCGTACGATGGA
GGAATTGATGAGCCGTTTAGGGGAATGAACGACCCAGATTGGGATTTATG
GGAGGAGTGAATGGGATGGCAAGGTGTTGGAATTAAGGAATTAGTCAACG
GGAGTTAAACCCTCATTCCTAAGGCTTAATAAATTATTAAAACAAAAAAA
ATTTAAATTAAAATGGAAAAAAGGGGCAAGTGCCCCAATCCTTTGGTGGG
TGTAATTAAGAAATGTGGAAGGATGTCGGGAAACTTCCTAACCAAAAGAA
AAAAAAAACCAGGCCATTTTTTGGATGGAACTTTGACTGCTCACCTGAAA
AGAACAGGGGTTGTTAAAAATTTTATTAACCCCCACATTCGGGTT
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