EY679514

Overview
NameEY679514
Unique NameEY679514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 8.699e-82
Identity = 152/199 (76.38%), Postives = 164/199 (82.41%), Query Frame = 1 
Query:   79 EILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            EI+HIQGGQCGNQIG+KFWEVVCAEHGIDPTG+Y GDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 EIVHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 198
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 8.699e-82
Identity = 152/201 (75.62%), Postives = 165/201 (82.09%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIG+KFWEVVCAEHGIDPTG+Y GD+DLQLERINVYYNEASCGR+VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.484e-81
Identity = 151/201 (75.12%), Postives = 165/201 (82.09%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIG+KFWEVVCAEHGID TG+YQG+ DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDSVRSGPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 5.638e-81
Identity = 151/201 (75.12%), Postives = 165/201 (82.09%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIG+KFWEVVCAEHGID TG+Y GD++LQLERINVYYNEASCGR+VPRAVLMDLEPGTMDSVRSGPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRTMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 5.638e-81
Identity = 149/201 (74.13%), Postives = 165/201 (82.09%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIGSKFWEVVC EHGIDPTG+Y G++DLQLER+NVYYNEASCGRYVPRA+LMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.364e-81
Identity = 150/201 (74.63%), Postives = 164/201 (81.59%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIGSKFWEVVC EHGIDPTG+Y G +DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.618e-81
Identity = 149/201 (74.13%), Postives = 165/201 (82.09%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIG+KFWEVVC EHGIDPTG+Y G++DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.618e-81
Identity = 150/201 (74.63%), Postives = 164/201 (81.59%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIGSKFWEVVC EHGIDPTG+Y G +DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.618e-81
Identity = 150/201 (74.63%), Postives = 164/201 (81.59%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIGSKFWEVVC EHGIDPTG+Y G +DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
[Close]
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.618e-81
Identity = 149/201 (74.13%), Postives = 165/201 (82.09%), Query Frame = 1 
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIG+KFWEVVC EHGIDPTG+Y G++DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
The following BLAST results are available for this feature:
BLAST of EY679514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 416
Match NameE-valueIdentityDescription
TBB2_PEA8.699e-8276.38Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB2_ARATH8.699e-8275.62Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB8_ARATH1.484e-8175.12Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB9_GOSHI5.638e-8175.12Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB6_ARATH5.638e-8174.13Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB6_ORYSJ7.364e-8174.63Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB6_MAIZE9.618e-8174.13Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]
TBB5_WHEAT9.618e-8174.63Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB5_MAIZE9.618e-8174.63Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]
TBB4_ORYSJ9.618e-8174.13Tubulin beta-4 chain OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679514 ID=EY679514; Name=EY679514; organism=Citrus sinensis; type=EST; length=945bp
AAAAGAAAAGGAAGAATCCCCCCTTTTTATCCTCTGCAAATCTCGCTAAT
CAAGAAACCCCAACTTAAGAAAATGCGTGAAATCCTTCACATTCAAGGGG
GCCAATGCGGGAACCAAATCGGATCCAAGTTCTGGGAAGTGGTTTGCGCC
GAGCACGGCATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCA
GCTTGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACG
TGCCTAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATGGATAGCGTC
AGGTCTGGTCCGTACGGTCAGGTTTTTAGGCCCGACAATTTTGTCTTTGG
CCAGTCCGGCGCCGGAAACAACTGGGCGAAGGGGCATTATACTGAAGGAG
CTGAGCTGATTGATTCTGTGCTTGATGTTGTTCGTAAAGAAGCCGAGAAC
TGCGATTGCTTGCAGGGATTTCAGGTGTGCCCTTCTCTGGTAGGAGGGAC
GGGTTCCGGGATGGGAAACTTTGTTGAATATCAAAGATAAAATAGGAAAA
CCGGGATAAAATGATGGCTACTTTCCTCTATTTTCCCCTTCCCCTAAGGC
TCCTGAAACTGGTGTTGAACCTAACAAACAACACTTCTAGATAATCGACT
ATTTGAAAATGAAGATAAACGGATGGGTTTTTGATAATGAAGCCCTTTAA
ATAAATATGGTTTTCCGACACCATAAAATACAAATCCTCTAAAAATTGGG
AGGTAATCAACTAATATATACTCTAGATACAACGCCAAGAAATTAAATTT
GTTTTTTAATAAAACCCCGGATATAAATAATTTAACATTTTTTTAAAATA
TTAGTGAAAATGATCCATTATTCATTTTTAAAAAATTTACAAATTTTTTT
TCATGTAGGCGAAATATTGTCCCCTATTGACATAACTCCCTGTGT
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