EY679513

Overview
NameEY679513
Unique NameEY679513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679513 vs. ExPASy Swiss-Prot
Match: LDHD_MOUSE (Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.604e-30
Identity = 70/185 (37.84%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   52 PVLPFLINSVYTFLEAYSHEQTLIVQ-----KIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEQGIGTGKMKYLEKELGTGALETMKIIKCSTRP 591
            PV P L      FLE +  +QTL  Q      I  ++ G+ F +A++ E + ELW  R  A +A  A+ P  +A  +DVCVP+S L E++  +K+E+ AS L   ++ H GDGNFH ++L DP   E+++  +     +   AL++ GTCTGE GIG GK + L++E+G   +ETM+ +K +  P
Sbjct:  296 PVAPTL------FLEFHGSQQTLAEQLQRTEAITQDNGGSHFSWAKEAEKRNELWAARHNAWYAALALSPGSKAYSTDVCVPISRLPEILVETKEEIKASKLTGAIVGHVGDGNFHCILLVDPDDAEEQRRVKAFAENLGRRALALGGTCTGEHGIGLGKRQLLQEEVGPVGVETMRQLKNTLDP 474          
BLAST of EY679513 vs. ExPASy Swiss-Prot
Match: DLD1_KLULA (D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis GN=DLD1 PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.961e-30
Identity = 67/160 (41.88%), Postives = 99/160 (61.88%), Query Frame = 1
Query:  124 VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACF----AMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEQGIGTGKMKYLEKELGTGALETMKIIKCSTRP 591
            V+KI S+HN T F FA D ++K ELW+ RK ALW+         P      +DV VP+S  A++I+ +K+E++AS L+ +++ HAGDGNFH  I+++    E R+ AE +   MV  A+  EGTCTGE G+G GK  YL +E+G   +  M+ +K +  P
Sbjct:  401 VEKIASQHNNTKFEFATDEDSKLELWEARKVALWSTIDTGRKTNPDANIWTTDVAVPISKFADVINATKEEMNASGLLTSLVGHAGDGNFHAFIIYN---TEQRKTAETIVENMVKRAIDAEGTCTGEHGVGIGKRDYLLEEVGEDTVAVMRKLKLALDP 557          
BLAST of EY679513 vs. ExPASy Swiss-Prot
Match: LDHD_HUMAN (Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.561e-28
Identity = 63/173 (36.42%), Postives = 102/173 (58.96%), Query Frame = 1
Query:   88 FLEAYSHEQTLIVQ-----KIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEQGIGTGKMKYLEKELGTGALETMKIIKCSTRP 591
            FLE +  +Q L  Q     +IV ++  +DF +A++ E +  LW  R  A +A  A  P  +   +DVCVP+S L E++ ++K++L+AS L  +++ H GDGNFH ++L +P   E+    +     +   AL++ GTCTGE GIG GK + L++E+G   +ETM+ +K    P
Sbjct:  325 FLEFHGSQQALEEQLQRTEEIVQQNGASDFSWAKEAEERSRLWTARHNAWYAALATRPGCKGYSTDVCVPISRLPEIVVQTKEDLNASGLTGSIVGHVGDGNFHCILLVNPDDAEELGRVKAFAEQLGRRALALHGTCTGEHGIGMGKRQLLQEEVGAVGVETMRQLKAVLDP 497          
BLAST of EY679513 vs. ExPASy Swiss-Prot
Match: DLD1_YEAST (D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae GN=DLD1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.904e-25
Identity = 62/160 (38.75%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  124 VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACF----AMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEQGIGTGKMKYLEKELGTGALETMKIIKCSTRP 591
            V+ +   ++   F FA+D + K ELW+ RK ALW+      + + S +   +DV VP+S   ++I  +KK++ AS LI  ++ HAGDGNFH  I++     E+ +   +L   MV  AL+ EGTCTGE G+G GK +YL +ELG   ++ M+ IK +  P
Sbjct:  408 VKAVAQLNHCNSFQFAKDDDEKLELWEARKVALWSVLDADKSKDKSAKIWTTDVAVPVSQFDKVIHETKKDMQASKLINAIVGHAGDGNFHAFIVY--RTPEEHETCSQLVDRMVKRALNAEGTCTGEHGVGIGKREYLLEELGEAPVDLMRKIKLAIDP 565          
The following BLAST results are available for this feature:
BLAST of EY679513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LDHD_MOUSE1.604e-3037.84Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_KLULA7.961e-3041.88D-lactate dehydrogenase [cytochrome], mitochondria... [more]
LDHD_HUMAN2.561e-2836.42Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_YEAST5.904e-2538.75D-lactate dehydrogenase [cytochrome] 1, mitochondr... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-A07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679513 ID=EY679513; Name=EY679513; organism=Citrus sinensis; type=EST; length=963bp
ACCCGGGGTCCGGGATTCCGGGGGCGACCCCGCGTCCGTGTCTTCATTTT
ACCAGTGCTCCCTTTTCTAATAAATTCTGTTTACACCTTCTTAGAGGCAT
ATTCTCATGAGCAGACACTAATTGTTCAGAAGATTGTGTCTGAGCACAAT
GGTACTGATTTTATTTTTGCGGAAGATCCTGAAGCTAAAAAGGAACTCTG
GAAGATGAGAAAGGAGGCACTCTGGGCTTGCTTTGCAATGGAGCCGAGTT
TTGAAGCAATGATTTCTGATGTATGTGTTCCTCTTTCTTGCCTGGCAGAG
TTGATATCAAGGTCAAAGAAAGAGCTTGATGCATCACCACTGATTTGCAC
TGTAATTGCTCATGCCGGTGATGGTAACTTTCACACGGTGATACTATTTG
ATCCGAGCAAAGAAGAGGACCGCCAGGAAGCAGAACGGTTAAATCGATTC
ATGGTCCATACTGCCTTGTCGATGGAAGGAACATGTACTGGTGAGCAGGG
TATTGGGACAGGGAAAATGAAGTATCTAGAAAAGGAGCTAGGCACTGGAG
CATTGGAGACGATGAAAATAATCAAATGTAGCACTAGACCCCTACCACAT
TCATGAATTCCGGGAAAGCTTAATTCACCCACATATTTGTTTCCTAATAT
TGGTCTGCGTAAAATTGGCCCTCAAGGGGTTAAATTTGCCCACACGTGTC
CTTTTGAGAAATGGATTTGCCATTTCATTTGGAAAGATCCCTTAACCCGG
GCTAGTGGTATTTTAAAGGTTATAAAAGGTTGGGCTAACCCCTGCGGCAT
AAATTTATTCTTTGAATAGGCCTAAAAATAAAAGACTGGGGGGCAACGGG
TACATGGCGCTATTTTTATATTATTTGTATTAAATCTACAAAAATTACTC
CCCCCTTTTTTATTTTTATTAATGGGTGTTGCTTTTGTATTATTTTTGTC
CCTTTGCCCCTAT
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