EY679510

Overview
NameEY679510
Unique NameEY679510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1048
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679510 vs. ExPASy Swiss-Prot
Match: ENDUA_XENLA (Poly(U)-specific endoribonuclease-A OS=Xenopus laevis GN=endou-A PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.172e-29
Identity = 68/162 (41.98%), Postives = 96/162 (59.26%), Query Frame = 2
Query:   38 IKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFVGGED---NYVQLGPYPVNIKCYRFG 511
            +K  H YL  K        DFK  + ++WF LY R  G+   S  FEHVFVGE K+   QE+ G HNW+QFYL+E + N+DY+GY+  + + + PD + Q+L +QF W +++K V ++ +GVSPEFE ALYT+ F    E      V+L  Y + I   R G
Sbjct:  115 MKMAHDYLVRKNQAKPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--QEMMGLHNWVQFYLQEKRKNIDYKGYVARQNKSR-PDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVFLASQEKMSREVVRLEEYELQIVVNRHG 273          
BLAST of EY679510 vs. ExPASy Swiss-Prot
Match: ENDUB_XENLA (Poly(U)-specific endoribonuclease-B OS=Xenopus laevis GN=endou-B PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.819e-29
Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 2
Query:   38 IKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFVGG---EDNYVQLGPYPVNIKCYRFG 511
            +K  H YL  K     +  DFK  + S+WF LY R  G+   S  FEHVFVGE K+   +E+ G HNW+QFYL+E + N+DY+GY+  + + + PD + Q+L +QF W +++K V ++ +GVSPEFE ALYT+ F           ++L  Y + I   R G
Sbjct:  115 MKMAHDYLVRKNQAKPSQNDFKVQLYSIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--KEMMGLHNWVQFYLQEKRKNIDYKGYVARQNKSR-PDEDDQVLNLQFSWKEMVKPVGSSFIGVSPEFEFALYTIVFLASQAKMSREVIRLEEYELQIVVNRHG 273          
BLAST of EY679510 vs. ExPASy Swiss-Prot
Match: ENDOU_XENTR (Poly(U)-specific endoribonuclease OS=Xenopus tropicalis GN=endou PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.771e-28
Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = 2
Query:   38 IKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFVGGED---NYVQLGPYPVNIKCYRFG 511
            +K  H YL  K     +  DFK  + ++WF LY R  G    S  FEHVFVGE K+   +E+ G HNW+QFYL+E +  +DY+GY+  + + + PD + Q+L +QF W +++K + ++ +GVSPEFE ALYT+ F    E      V++  Y + I   R G
Sbjct:  116 MKIAHDYLVRKNQAKPSRNDFKAQLYTIWFQLYSRAPGQGPDSCGFEHVFVGESKRG--KEIMGLHNWVQFYLQEKRKTIDYKGYVGRQNKSR-PDHDDQVLNLQFSWKEMVKPIGSSFIGVSPEFEFALYTVVFLTSQEKMTREVVRVEEYEMQIVVNRHG 274          
BLAST of EY679510 vs. ExPASy Swiss-Prot
Match: PP11_HUMAN (Placental protein 11 OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.170e-27
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 2
Query:   83 GNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFV-GGEDNYVQLGPYPVNIKCY 502
            G+ Q+F   + ++WF LY RG     SS FEHVF GE+K+    +V+GFHNW++FYLEE +G VDY  +I+       PD    +L +QF W+   K V +  +G SPEFE ALY+LCF    G+   + LG YP+ ++ Y
Sbjct:  213 GSEQEFVDDLKNMWFGLYSRGNEEGDSSGFEHVFSGEVKKG---KVTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPD----VLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLCFIARPGKVCQLSLGGYPLAVRTY 346          
The following BLAST results are available for this feature:
BLAST of EY679510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ENDUA_XENLA1.172e-2941.98Poly(U)-specific endoribonuclease-A OS=Xenopus lae... [more]
ENDUB_XENLA5.819e-2940.74Poly(U)-specific endoribonuclease-B OS=Xenopus lae... [more]
ENDOU_XENTR3.771e-2839.51Poly(U)-specific endoribonuclease OS=Xenopus tropi... [more]
PP11_HUMAN4.170e-2743.26Placental protein 11 OS=Homo sapiens PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-A04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679510 ID=EY679510; Name=EY679510; organism=Citrus sinensis; type=EST; length=1048bp
CCGGGGAAATTTCCCCGGGGTCGACCCCCGCGTTCCGATTAAATATCTTC
ATAAGTATCTCTCAGCCAAGGGCATTGTATCTGGGAATTATCAAGATTTT
AAAAGAACAATCAGCAGTCTCTGGTTTGATCTTTATGGCCGAGGTGGTAC
ATCCAGTTGCTCTTCTGCTTTTGAGCATGTTTTTGTCGGGGAAATCAAAC
AAGCTGGTGAACAAGAAGTTTCTGGCTTCCATAACTGGCTTCAGTTTTAC
CTCGAAGAAGCAAAAGGAAATGTTGATTACCAAGGATATATATTCCCCCG
TCGTCGCGGACAAATCCCGGACTCTGAAACGCAGTTGCTAACAGTTCAGT
TTGAATGGAATGACATTCTCAAATCTGTATCAACCACTTTGGTCGGAGTG
AGTCCAGAGTTTGAAATTGCTTTGTACACCCTATGTTTCTTCGTTGGTGG
AGAAGATAACTATGTACAGCTGGGTCCATACCCTGTTAATATCAAGTGCT
ATCGATTTGGAGACAGAAATTGGTTCCGTCTTTCCCATTTGCAGAGAATT
TGAATTTTCTGGTTCTTGGTGAAGCCCTTGGAGTCTTACTCCAAAAAAGG
TTACTGTGTCTAAAAAAAGTAGAAATTGTGAAACCATGTAAAAATATGTG
CTAAAAAACTGAGGAAAGTTAATTAAATAGACTGTTGTTTTAGGAATTTT
GCTATCTAAAGGTGGAAAAATAAAACCATGCAAAAACCTTTTTGGTCATT
ATTGATGATTGGTATGCTCCCCCCNCTACTCTACTTTTATATTATATAAA
AACAAATAAAAATTAATAACAATGAGTTAAATATATCCAATATTTAATGA
TATTATAAAAAATACAACTAAAACAAATATATTGGGGGGGGGGCCCCCCC
TAAAAAGAAAACCAATCATTTTAAAAATCGCGCTGGTTGGGCAAGACTCA
ATCAACACCTTCTCTATTTATAGGGGCCACCCCACAAAATTTTTCTAACT
TTTACCGGGGTGCCGCGCGGTCTTTTTTTTTGTTTAAAACAGCGAGTG
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