EY679503

Overview
NameEY679503
Unique NameEY679503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1056
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679503 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.080e-19
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  181 MKGGKSKSDTRNA--KLSVNXXXXXXXXXXXXXXX----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 378
            MKGGKSK++++ A  KL+VN                   DPNKPKRP SAFFVFMEEFR+ + K+HP+NK+V
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAV 72          

HSP 2 Score: 46.2098 bits (108), Expect = 2.080e-19
Identity = 19/32 (59.38%), Postives = 28/32 (87.50%), Query Frame = 3
Query:  414 KSMSEADKAPYVG*GKKRRVDYEKDMKNYNRK 509
            K+MS+A+KAPYV   +KR+V+YEK+M+ YN+K
Sbjct:   84 KTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKK 115          

HSP 3 Score: 22.3274 bits (46), Expect = 2.080e-19
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  380 AAVGKAGGEKWE 415
            +AVGKA G KW+
Sbjct:   73 SAVGKAAGAKWK 84          
BLAST of EY679503 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.678e-18
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  181 MKGGKSKSDTRNA--KLSVNXXXXXXXXXXXXXXX-----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 378
            MKGGKSK +++ A  KL+VN                    DPNKPKRP SAFFVFM +FREQYKKDHP NKSV
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSV 73          

HSP 2 Score: 35.039 bits (79), Expect = 4.678e-18
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 3
Query:  414 KSMSEADKAPYVG*GKKRRVDYEKDMKNYNRK 509
            KS+SE +KAPYV    K++ +YE  ++ YN+K
Sbjct:   85 KSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          

HSP 3 Score: 23.0978 bits (48), Expect = 4.678e-18
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  380 AAVGKAGGEKWE 415
            AAVGKA GE+W+
Sbjct:   74 AAVGKACGEEWK 85          
BLAST of EY679503 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.840e-17
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  181 MKGGKSKSDTRNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 378
            MKGGKSK+ + N KL+V                DPNKPKRP SAFFVFME+FR+ YK+ HP NKSV
Sbjct:    1 MKGGKSKAKSDN-KLAVKKQAADTKKTKKAVK-DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSV 64          

HSP 2 Score: 36.5798 bits (83), Expect = 4.840e-17
Identity = 13/32 (40.62%), Postives = 25/32 (78.12%), Query Frame = 3
Query:  414 KSMSEADKAPYVG*GKKRRVDYEKDMKNYNRK 509
            K ++ A+KAP++   +KR+ +YEK+++ YN+K
Sbjct:   76 KQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK 107          

HSP 3 Score: 25.409 bits (54), Expect = 4.840e-17
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  380 AAVGKAGGEKWE 415
            A VGKAGG+KW+
Sbjct:   65 AVVGKAGGDKWK 76          
The following BLAST results are available for this feature:
BLAST of EY679503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HMGL_SOYBN2.080e-1951.39HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA4.678e-1856.16HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_IPONI4.840e-1756.06HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-057-H08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679503 ID=EY679503; Name=EY679503; organism=Citrus sinensis; type=EST; length=1056bp
GTCCCGGGTTCCGGGGATTCCCGGGGTCGACCCCGCGTCCGCCCACGCGT
CCGCCCACGCGTCCGCCCACGCGTCCGATCCGCTATTCACATCTGCGTCT
CTCTCTTTTTCTCTTTCCTCTTTTTCTCTCATTTGAAGCCCTAACCCTAG
CTCTATCTTTCTTCAGAAACAGGATTTGAAATGAAAGGAGGTAAATCAAA
GTCAGATACCAGAAACGCCAAGCTCTCTGTGAACAAGAAGCCTGCCAAAG
CTGGACGAAAATCGGGAAAGGCAGCTAAGGACCCGAACAAGCCAAAGAGG
CCAGCCAGCGCCTTCTTTGTTTTCATGGAAGAATTCCGTGAACAATACAA
GAAGGATCATCCTAAGAACAAATCAGTTTGCTGCTGTTGGTAAAGCTGGT
GGTGAGAAATGGGAAGTCAATGTCTGAAGCTGATAAAGCACCGTATGTTG
GCTAAGGGAAAAAGCGCAGGGTTGATTATGAGAAGGATATGAAAAACTAC
AATAGGAAACATGGCGGAGGGAACTAAGCCGGAGGAAGAAGAGGAATCTG
AGAATTCTATGTCAGAAGGGAATGATGGAGGATGATGATGAAAAAGGCAG
GGGGGAAGAGGATGAGGAGGATTAAGAATTTGAAGGAAGAATTTACCCTA
GTCTTGTTAGGGTGGGGATAAGGTTCTAAACAAAGTTTGGTTATGCAATG
GGGTTGGGTCGGGTAATTTTTTTGGGATGTCTTCAGCCCACCACCAACAT
AAGGAAAGAAAAATACAGGTTGTTTTCTCCCCTACAAATTTTTTTATAAA
GCAGGCTTATTAAAAAAATAATAAGAGTTGTGAGAGGGGGGAAAAATTTC
CTTGGGCTTATATTGTAATCTGGTTGTTTTAAATTATATTATATATAATT
AACCTAAAAGGGGGTCTTCCTTCCTGTTGGGTTATGAAAAAAAAAAAGAA
ATATAAAAAAATAAATAAAATAATTTGAAAAAATAAAAACAAATGAGGGG
TCAGTGCGCCCTCTCTTCTTATTGGTAGTATTGACCCGACGCGTGTTTGT
GTTCTC
back to top