EY679493

Overview
NameEY679493
Unique NameEY679493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679493 vs. ExPASy Swiss-Prot
Match: GPAT4_ARATH (Glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=GPAT4 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.210e-23
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = 3 
Query:   21 LSVNPRTKRATGFVKRPGVLVGKWKKLAVLKEFGEDAPDLGIGDRQTDHDFMSICKEGYMVLPS*SAKPLPTCSLE 248
            + VNP+T +ATGFVK+PGVLVG  K+LA+LKEFG+D+PDLG+GDR +DHDFMSICKEGYMV  + SA  +P  SL+
Sbjct:  154 IEVNPKTMKATGFVKKPGVLVGDLKRLAILKEFGDDSPDLGLGDRTSDHDFMSICKEGYMVHETKSATTVPIESLK 229
[Close]
BLAST of EY679493 vs. ExPASy Swiss-Prot
Match: GPAT8_ARATH (Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.168e-22
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 3 
Query:   21 LSVNPRTKRATGFVKRPGVLVGKWKKLAVLKEFGEDAPDLGIGDRQTDHDFMSICKEGYMVLPS*SAKPLP 233
            + VNP+T RATGFVK+PGVLVG  K+LA+LKEFG ++PDLG+GDR +DHDFMS+CK+GYMV  + SA  +P
Sbjct:  153 IEVNPKTNRATGFVKKPGVLVGDLKRLAILKEFGNESPDLGLGDRTSDHDFMSLCKKGYMVHATKSATTIP 223
[Close]
BLAST of EY679493 vs. ExPASy Swiss-Prot
Match: GPAT6_ARATH (Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.091e-17
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 3 
Query:   36 RTKRATGFVKRPGVLVGKWKKLAVLKEFG---EDAPDLGIGDRQTDHDFMSICKEGYMVLPS*SAKPLPTCSLEKP 254
            ++ RATGF ++PG+LVG++K+  VL+EFG    D PDLG+GD +TDHDFMSICKEGYMV P    +PLP   L  P
Sbjct:  159 KSGRATGFTRKPGILVGQYKRDVVLREFGGLASDLPDLGLGDSKTDHDFMSICKEGYMV-PRTKCEPLPRNKLLSP 233
The following BLAST results are available for this feature:
BLAST of EY679493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GPAT4_ARATH2.210e-2367.11Glycerol-3-phosphate acyltransferase 4 OS=Arabidop... [more]
GPAT8_ARATH4.168e-2266.20Probable glycerol-3-phosphate acyltransferase 8 OS... [more]
GPAT6_ARATH3.091e-1757.89Glycerol-3-phosphate acyltransferase 6 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-057-G10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679493 ID=EY679493; Name=EY679493; organism=Citrus sinensis; type=EST; length=894bp
CAAGGTTTTGGGCACGGAGATTGAGTGTGAACCCCAGGACCAAGAGGGCT
ACGGGGTTTGTTAAAAGGCCTGGAGTCTTAGTGGGGAAATGGAAGAAATT
GGCCGTTTTGAAGGAGTTTGGAGAGGATGCTCCTGATCTTGGCATCGGGG
ACCGCCAGACTGACCACGATTTCATGTCTATTTGCAAGGAGGGTTACATG
GTGCTTCCAAGCTAATCAGCAAAGCCATTGCCCACGTGTTCGCTTGAAAA
GCCGGATAATCATCCTCGAATGGCCGGTTATTTCTGCGGCCGGAACCACT
TAACGCTTTAATCACCTTAATTTGGCTGCCTTTTGGATTCTTCCTTTCTG
TCTTCGTCGTTGTACTTTCGATCTTCCCTCTCCCTCTAGCTACATCAAAA
GTTAAATATACAAAATGGACGGGGAGTATATATATTGATTATAGTAAAAA
ATTCAATCCTAGATCATAATAGTGATATACACTGAAATTTCATCAATGAG
TAAAGACGAATTTGATAAAATTAAAAGTTGATAAATTATTAAAAATGTAA
CCAAAATACCGTGACATATTAATTTACTTAGGTTATCTCATATTTTCTTA
CTCGAACTTCTCGTTATATTGTCTCCATTGAACTACTAGCGTTAGGTGCC
TGTTTGAGACGGAGGATGATTGGTAGTTACTAAGTTAGCGGTACACACGC
TGAGATTCTCTAACTCTCTACTGTCCCTTACTAATTCTCATATTTTCTAC
CATAATAAGCCCATTGTAAATAAGACATATTAAACATTTCTGAATCTAAT
ATCTTTAGATTGACAAAAATGACTGTTATAACTTAAGTTAAATTTTTTTC
AACGTGTGCTCTTTTAGTATGTGATGTGGCACAATTAGCAGGAG
back to top