EY679479

Overview
NameEY679479
Unique NameEY679479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.604e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 7.604e-14
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.604e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 7.604e-14
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.604e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 7.604e-14
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.812e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 2.812e-13
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETSKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.812e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 2.812e-13
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.812e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 2.812e-13
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.743e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 4.743e-13
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.743e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 4.743e-13
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.039e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 1.039e-12
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
[Close]
BLAST of EY679479 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.349e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:   98 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGG 196
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGG
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGG 33

HSP 2 Score: 27.335 bits (59), Expect = 1.349e-12
Identity = 19/56 (33.93%), Postives = 23/56 (41.07%), Query Frame = 3 
Query:  198 IDNCVDQRFKNEAAEMNIR*FNTPVCITSPLGERDG*STYXXXXXXXXXXXXYCLV 365
            ID  V +RF+ EAAEMN R F     +     ER+   T             YC V
Sbjct:   34 IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89
The following BLAST results are available for this feature:
BLAST of EY679479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
EF1A_WHEAT7.604e-14100.00Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ORYSJ7.604e-14100.00Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE7.604e-14100.00Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA2.812e-1396.97Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_MANES2.812e-1396.97Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A1_DAUCA2.812e-1396.97Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_TOBAC4.743e-1396.97Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH4.743e-1396.97Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOYBN1.039e-1293.94Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_SOLLC1.349e-1293.94Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-057-F07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679479 ID=EY679479; Name=EY679479; organism=Citrus sinensis; type=EST; length=943bp
TCCGCGTGACGCGTTGGGTCTCAATTTCCTTAATGGCGGCGAGAGAGAAC
CATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGATTTGCATAATG
GGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTC
TGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTTATT
GACAATTGTGTAGATCAGAGGTTCAAGAACGAAGCAGCTGAGATGAACAT
AAGGTAATTTAATACTCCTGTGTGCATTACTAGTCCCTTGGGTGAGCGAG
ACGGTTGATCTACTTATGATATAGATCGGATAGATTTCAAGATTTTCATT
ATCTATTGCCTCGTCGGTATAGCAATATGCATAGTAAGGTTTTTTACACA
TTAGAACATCCTGAGGGGGGATGGTGAGAGGGACCTAATACTATACGTTG
AATCGCATTTCCCGAATTACTCTACATATATTTTTCTTATTATATTATAG
ACACCTTATAGTTAATTAAAGGGCTGTACACACGTAAGTTTTCTACGTAA
TCTTAATTAACAGGATCATAGATCGAGAATCCAGCAGATGTAAAATGTAT
GTTATTTTCTACTAACAAAACATAGTTGATTTTATACTATTAATTTTTTT
ATTATTGATATCTTTTATGATATTTTTTAATACTTCATATAAAATACAGA
ATTAATTCTAGTTGTCGTTTGTCATTAGAATCATCTTTATCTCTAATTCA
GGTATATAAATTAGTAGTAATATGTATACTTAATTGTAGTATAAAAACAT
TATAATATTAAATGTATAAAGAAGTTATTGACTCCATTGTATCTATAAAC
CCTGTGTTAATATCGCTACTAATTTACTATCATTTATTTTTATAACTTCT
TAAATCTTGTCTATTATATTCTCCGACGTGCCAATGGAAGACT
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